| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 4,202,621 | Δ579 bp | [metH] | [metH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4202621 | 4203199 | 579 | 44 [1] | [1] 43 | [metH] | [metH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4202620 | 1 (0.020) | 42 (0.790) | 38/150 | 0.4 | 97.7% | intergenic (‑61/‑139) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| ? | REL606 | 4203200 = | 1 (0.020) | coding (442/3684 nt) | metH | B12‑dependent methionine synthase | |||||
AATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGAT > REL606/4202545‑4202693 | aaTGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAAt < 1:505553/76‑1 (MQ=255) gCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccgg < 2:290977‑M1/76‑8 (MQ=255) ccATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCCATgatccggcatt > 2:420518‑M1/1‑65 (MQ=255) aTGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttc > 2:1386204‑M1/1‑63 (MQ=255) aTGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttc < 1:721025‑M1/76‑14 (MQ=255) gACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgt < 1:1343100‑M1/76‑16 (MQ=255) cAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaa < 2:354326‑M1/76‑18 (MQ=255) cAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaa < 2:1592240‑M1/76‑18 (MQ=255) gTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaata < 1:140290‑M1/76‑20 (MQ=255) tctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatat < 1:1314004‑M1/76‑21 (MQ=255) tctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatat > 1:786987‑M1/1‑56 (MQ=255) tcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatca < 1:494169‑M1/76‑23 (MQ=255) ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcac > 2:905108‑M1/1‑53 (MQ=255) ttttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttt > 1:784762‑M1/1‑50 (MQ=255) ttttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttt > 1:1045847‑M1/1‑50 (MQ=255) ttttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttt < 1:1570418‑M1/76‑27 (MQ=255) tttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcactttt < 2:652614‑M1/76‑28 (MQ=255) tttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcactttt < 1:674689‑M1/76‑28 (MQ=255) ttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttg > 1:914213‑M1/1‑48 (MQ=255) gTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgg > 2:416724‑M1/1‑44 (MQ=255) tATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacggg > 1:1475696‑M1/1‑43 (MQ=255) cGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctg < 2:112883‑M1/76‑37 (MQ=255) ggAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtg < 1:267029‑M1/76‑40 (MQ=255) gAAATCATTTTCATTTTTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtgg > 1:217377‑M1/1‑36 (MQ=255) cattttcattttTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcc > 1:519275‑M1/1‑31 (MQ=255) attttcattttTATTGTTAGCTGATGCGATggtccggcgtttcgtgatatcacttttgacgggctggtggcggcct < 2:814186‑M1/76‑47 (MQ=255) tttcattttTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctat > 1:862252‑M1/1‑28 (MQ=255) ttcattttTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatc > 1:1614565‑M1/1‑27 (MQ=255) ttcattttTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatc < 2:590279‑M1/76‑50 (MQ=255) attttTATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgag < 2:1624268‑M1/76‑53 (MQ=255) tttATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagt > 1:169853‑M1/1‑21 (MQ=255) tATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtcc > 2:711168‑M1/1‑19 (MQ=255) tATTGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtcc > 1:1386536‑M1/1‑19 (MQ=255) ttGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctgggggcggcctatcgagagtccac > 1:1368087‑M1/1‑17 (MQ=255) tGTTAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccacc > 1:94069‑M1/1‑16 (MQ=255) gTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCt > 1:1540725/1‑76 (MQ=255) ttAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaa < 1:192075‑M1/76‑63 (MQ=255) ttAGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaa > 1:907268‑M1/1‑14 (MQ=255) aGCTAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaag > 1:434962‑M1/1‑12 (MQ=255) cTAAGGCAATgatccggcattgcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaagcg < 2:621819‑M1/76‑67 (MQ=255) tAATGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaagcgc > 2:1524889‑M1/1‑9 (MQ=255) aaTGCAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaagcgct > 1:1155686‑M1/1‑8 (MQ=255) cAATgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaagcgctggtg > 1:1143448‑M1/1‑4 (MQ=255) aaTgatccggcatttcgtaatatcacttttgacgggctggtggcggcctatcgagagtccaccaaagcgctggtgg < 2:1157285‑M1/76‑74 (MQ=255) | AATGGGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGAT > REL606/4202545‑4202693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |