| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 4,163,890 | Δ9 bp | coding (3035‑3043/4029 nt) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4163889 | 1 (0.020) | 57 (0.970) | 45/136 | 0.2 | 98.4% | coding (3034/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | REL606 | 4163899 = | 1 (0.020) | coding (3044/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
GAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCA > REL606/4163814‑4163964 | gagaAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGG < 1:1114924‑M1/76‑1 (MQ=255) gaAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGct < 2:877604‑M1/76‑3 (MQ=255) gaAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGct < 2:678342‑M1/76‑3 (MQ=255) gaAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGct > 2:257920‑M1/1‑74 (MQ=255) aaGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctg < 2:542241‑M1/76‑4 (MQ=255) cTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagc < 2:1866441‑M1/76‑7 (MQ=255) aCAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagta > 2:708697‑M1/1‑66 (MQ=255) aCAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagta > 2:1797913‑M1/1‑66 (MQ=255) cAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtat > 1:1247271‑M1/1‑65 (MQ=255) cAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtat > 2:1270860‑M1/1‑65 (MQ=255) aaaCTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatg < 2:2053177‑M1/76‑13 (MQ=255) aCTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgac < 1:264622‑M1/76‑15 (MQ=255) tGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCa < 1:1245013/76‑1 (MQ=255) gcgcgATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactg > 2:1552859‑M1/1‑56 (MQ=255) gcgcgATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactg < 1:418224‑M1/76‑21 (MQ=255) gcgATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaa > 2:1312063‑M1/1‑54 (MQ=255) cgATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaa < 1:669237‑M1/76‑24 (MQ=255) cgATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaa > 1:1202184‑M1/1‑53 (MQ=255) cGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacg < 1:942641‑M1/76‑28 (MQ=255) gctggctgGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacga > 1:1132176‑M1/1‑48 (MQ=255) ctggctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgag < 2:1807536‑M1/76‑30 (MQ=255) ctggctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgag > 2:623544‑M1/1‑47 (MQ=255) ggctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagtt > 1:98867‑M1/1‑45 (MQ=255) ctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcg < 2:450257‑M1/76‑34 (MQ=255) ctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcg < 2:1544188‑M1/76‑34 (MQ=255) ctggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcg > 1:1530732‑M1/1‑43 (MQ=255) tggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcga > 1:198418‑M1/1‑42 (MQ=255) tggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcga > 1:1534396‑M1/1‑42 (MQ=255) ggAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgag > 1:744699‑M1/1‑41 (MQ=255) gAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgaga < 2:885222‑M1/76‑37 (MQ=255) tGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaa > 1:1233105‑M1/1‑36 (MQ=255) tGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaa > 2:1894167‑M1/1‑36 (MQ=255) gggCCTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaa < 1:780953‑M1/76‑42 (MQ=255) ccTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactc > 1:1857983‑M1/1‑32 (MQ=255) cTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcg < 2:802476‑M1/76‑46 (MQ=255) cTGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcg > 1:2047062‑M1/1‑31 (MQ=255) tGACCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcga > 2:383868‑M1/1‑30 (MQ=255) aCCGACGAAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaag > 2:1239056‑M1/1‑28 (MQ=255) gacgaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcga < 1:883758‑M1/76‑52 (MQ=255) gacgaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcga > 2:572251‑M1/1‑25 (MQ=255) acgaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgan < 1:563113‑M1/76‑53 (MQ=255) acgaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaa > 1:1250999‑M1/1‑24 (MQ=255) acgaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaa < 2:1692537‑M1/76‑53 (MQ=255) gaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaac < 1:836072‑M1/76‑55 (MQ=255) gaAGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaac > 1:147732‑M1/1‑22 (MQ=255) aaGAGAAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacg > 2:1967597‑M1/1‑21 (MQ=255) gagaAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgcc < 2:578069‑M1/76‑58 (MQ=255) gagaAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgcc < 2:415802‑M1/76‑58 (MQ=255) gagaAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaacacgaagcgaagcgcc < 2:1526683‑M1/76‑58 (MQ=255) gaAACAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgc > 1:872556‑M1/1‑17 (MQ=255) aaCAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaa > 2:283612‑M1/1‑15 (MQ=255) aCAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaa > 1:810703‑M1/1‑14 (MQ=255) aCAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaa > 1:461657‑M1/1‑14 (MQ=255) cAAAATCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaa < 2:1249276‑M1/76‑64 (MQ=255) aaaaTCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaat < 2:1351121‑M1/76‑65 (MQ=255) aaaaTCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaat < 2:211855‑M1/76‑65 (MQ=255) aaaTCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatc > 2:1579710‑M1/1‑11 (MQ=255) aTCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcac > 1:456341‑M1/1‑9 (MQ=255) aTCAGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcac > 2:1194608‑M1/1‑9 (MQ=255) aGCTGGctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcaccca < 1:2030199‑M1/76‑71 (MQ=255) ggctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggc > 1:568192‑M1/1‑2 (MQ=255) gctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcg > 2:1432480‑M1/1‑1 (MQ=255) gctgagcagtatgacgaactgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcg > 1:1308388‑M1/1‑1 (MQ=255) | GAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCA > REL606/4163814‑4163964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |