| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | REL606 | 4,163,890 | Δ9 bp | coding (3035‑3043/4029 nt) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4163889 | 1 (0.020) | 57 (0.970) | 45/136 | 0.2 | 98.4% | coding (3034/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | REL606 | 4163899 = | 1 (0.020) | coding (3044/4029 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
CAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGA > REL606/4163825‑4163974 | gaagctcgacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggct < 2:877604‑M2/2‑1 (MQ=255)gaagctcgacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggct < 2:678342‑M2/2‑1 (MQ=255)gaagctcgacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggct > 2:257920‑M2/75‑76 (MQ=255) aagctcgacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggctg < 2:542241‑M2/3‑1 (MQ=255) ctcgacaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGc < 2:1866441‑M2/6‑1 (MQ=255) tGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCa < 1:1245013/76‑1 (MQ=255) acaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTa > 2:708697‑M2/67‑76 (MQ=255) acaaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTa > 2:1797913‑M2/67‑76 (MQ=255) caaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTAt > 2:1270860‑M2/66‑76 (MQ=255) caaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTAt > 1:1247271‑M2/66‑76 (MQ=255) aaactgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATg < 2:2053177‑M2/12‑1 (MQ=255) actgccgcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGAc < 1:264622‑M2/14‑1 (MQ=255) gcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTg < 1:418224‑M2/20‑1 (MQ=255) gcgcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTg > 2:1552859‑M2/57‑76 (MQ=255) gcgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGaa > 2:1312063‑M2/55‑76 (MQ=255) cgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGaaa < 1:669237‑M2/23‑1 (MQ=255) cgatcgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGaaa > 1:1202184‑M2/54‑76 (MQ=255) cgctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACg < 1:942641‑M2/27‑1 (MQ=255) gctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGa > 1:1132176‑M2/49‑76 (MQ=255) ctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAg < 2:1807536‑M2/29‑1 (MQ=255) ctggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAg > 2:623544‑M2/48‑76 (MQ=255) ggctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGtt > 1:98867‑M2/46‑76 (MQ=255) ctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCg < 2:450257‑M2/33‑1 (MQ=255) ctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCg > 1:1530732‑M2/44‑76 (MQ=255) ctggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCg < 2:1544188‑M2/33‑1 (MQ=255) tggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCga > 1:198418‑M2/43‑76 (MQ=255) tggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCga > 1:1534396‑M2/43‑76 (MQ=255) ggagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCgag > 1:744699‑M2/42‑76 (MQ=255) gagctgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCgaga < 2:885222‑M2/36‑1 (MQ=255) tgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAgaagaa > 1:1233105‑M2/37‑76 (MQ=255) tgggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAgaagaa > 2:1894167‑M2/37‑76 (MQ=255) gggcctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGaaa < 1:780953‑M2/41‑1 (MQ=255) cctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTc > 1:1857983‑M2/33‑76 (MQ=255) ctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCg < 2:802476‑M2/45‑1 (MQ=255) ctgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCg > 1:2047062‑M2/32‑76 (MQ=255) tgaccgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGa > 2:383868‑M2/31‑76 (MQ=255) accgacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAg > 2:1239056‑M2/29‑76 (MQ=255) gacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGa > 2:572251‑M2/26‑76 (MQ=255) gacgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGa < 1:883758‑M2/51‑1 (MQ=255) acgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCgan < 1:563113‑M2/52‑2 (MQ=255) acgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGaa > 1:1250999‑M2/25‑76 (MQ=255) acgaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGaa < 2:1692537‑M2/52‑1 (MQ=255) gaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAc < 1:836072‑M2/54‑1 (MQ=255) gaagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAc > 1:147732‑M2/23‑76 (MQ=255) aagagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAcg > 2:1967597‑M2/22‑76 (MQ=255) gagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAcgcc < 2:415802‑M2/57‑1 (MQ=255) gagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAcgcc < 2:578069‑M2/57‑1 (MQ=255) gagaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACACGAAGCGAAGcgcc < 2:1526683‑M2/57‑1 (MQ=255) gaaacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAcgccgc > 1:872556‑M2/18‑76 (MQ=255) aacaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCaa > 2:283612‑M2/16‑76 (MQ=255) acaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCaaa > 1:810703‑M2/15‑76 (MQ=255) acaaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCaaa > 1:461657‑M2/15‑76 (MQ=255) caaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCaaaa < 2:1249276‑M2/63‑1 (MQ=255) aaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAAt < 2:211855‑M2/64‑1 (MQ=255) aaaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAAt < 2:1351121‑M2/64‑1 (MQ=255) aaatcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATc > 2:1579710‑M2/12‑76 (MQ=255) atcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCAc > 2:1194608‑M2/10‑76 (MQ=255) atcagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCAc > 1:456341‑M2/10‑76 (MQ=255) agctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCa < 1:2030199‑M2/70‑1 (MQ=255) ggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGc > 1:568192‑M2/3‑76 (MQ=255) gCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCg > 1:1308388‑M2/2‑76 (MQ=255) gCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCg > 2:1432480‑M2/2‑76 (MQ=255) ctgAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGcga > 1:214859/1‑76 (MQ=255) | CAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGA > REL606/4163825‑4163974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |