| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,607,664 | IS1 (–) +9 bp | coding (202‑210/1323 nt) | deoA → | thymidine phosphorylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4550679 = | NA (NA) | 49 (0.830) | 29/150 | 1.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 4607664 = | 0 (0.000) | coding (202/1323 nt) | deoA | thymidine phosphorylase | |||||
| * | ? | REL606 | = 4551446 | NA (NA) | 82 (1.420) | 50/148 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | REL606 | = 4607672 | 0 (0.000) | coding (210/1323 nt) | deoA | thymidine phosphorylase | |||||
CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4550753‑4550679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > REL606/4607664‑4607736 CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:509490/76‑1CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:141708/76‑1CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA < 1:773119/76‑1 taATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC < 1:434435/74‑1 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC > 1:1321363/1‑76 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC < 1:729574/76‑1 TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAC > 1:188694/1‑76 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAGCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACg < 2:1824519/76‑2 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACC > 2:405772/1‑76 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACC > 2:658013/1‑76 TAGAAACAGAACCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGT < 1:60313/76‑1 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTT > 2:822325/1‑76 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTT > 1:1517105/1‑76 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTC > 1:417296/1‑76 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCT < 2:1677690/76‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 2:1656486/76‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 2:142608/76‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTC < 1:1485469/76‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGAC > 2:858790/1‑76 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACT > 2:41057/1‑76 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACT > 2:459481/1‑76 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGG < 1:596374/76‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAA > 2:327098/1‑76 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAA > 2:1467574/1‑76 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAG > 1:1132126/1‑76 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCC > 1:85832/1‑76 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGC > 2:1882096/1‑76 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCA < 2:463922/76‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCAT > 1:1622907/1‑76 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCT < 1:1510158/76‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTG < 1:743470/76‑1 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA > 2:866262/1‑76 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA > 2:265366/1‑76 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAA < 2:490214/76‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCC < 1:7899/76‑1 ACCATCATACACTAAACCAGTAAGTTGTCAGCATCACCTCCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCC < 2:475856/76‑1 ACTAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGAT > 1:1030094/1‑76 ccAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATA > 1:644450/3‑76 TAAATCAGTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAA > 1:940051/1‑76 GTAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCC < 1:1527317/76‑1 TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA < 1:41057/76‑1 TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA > 2:663744/1‑76 TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA < 1:459481/76‑1 TAAGTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCA > 2:295344/1‑76 GTTGGCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTG < 2:962719/76‑1 GCAGCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGG < 1:786981/76‑1 GCATCACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGT > 1:244132/1‑76 ACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG < 2:796592/76‑1 ACCACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > 2:1796427/1‑76 CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4550753‑4550679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTCTCGACTGGAAAAGCCTGCATCTGAATGGCCCGATTGTTGATAAACATTCCACTGGTGGCGTCGGCG > REL606/4607664‑4607736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |