| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,031,850 | Δ22,863 bp | [manB]–wcaJ | 22 genes [manB], manC, insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2031850–2031888 | 2054712 | 22825–22863 | 55 [0] | [1] 56 | [manB]–wcaJ | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2031849 | 0 (0.000) | 55 (0.830) | 41/148 | 0.6 | 99.1% | coding (949/1365 nt) | manB | Phosphomannomutase |
| ? | REL606 | 2054713 = | 1 (0.020) | intergenic (‑42/+13) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase | |||||
TGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2031777‑2031849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCG > REL606/2054713‑2054786 TGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGA > 1:99457/1‑76 GCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGAT < 2:1255474/76‑1 CAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATC > 1:1095707/1‑76 CAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATC > 1:1442972/1‑76 CAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATC > 1:173587/1‑76 CAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATC < 1:1013378/76‑1 CAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATC < 1:877114/76‑1 AGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAGGATCC > 2:2017697/1‑76 AGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCC < 1:1218445/76‑1 GTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCG < 2:174858/76‑1 TAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGA > 2:1806722/1‑76 TAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGA > 1:1780303/1‑76 AAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGAC < 2:157967/76‑1 AAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGCCTTCCTTGCGGGAAGATCCGAC > 2:2131669/1‑76 CGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATT < 2:1100292/76‑1 CGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATT < 1:865473/76‑1 CGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATT < 1:2030138/76‑1 AAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTAC > 1:928423/1‑76 TCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCG < 1:1975217/76‑1 GGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCA < 1:1475067/76‑1 TAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAAC < 2:1231352/76‑1 AGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACG > 1:961761/1‑76 GTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGT > 1:888044/1‑76 GGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCA < 2:762242/76‑1 GGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCA > 2:142953/1‑76 GTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAG > 2:96850/1‑76 TGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGC > 2:1920277/1‑76 TGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGCCAGC > 1:1481348/1‑76 GGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCA > 1:245180/1‑76 GGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAG < 1:884228/76‑1 CGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAG > 1:645856/1‑76 CTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTT > 2:1761972/1‑76 TCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTC < 1:1522015/76‑1 CATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGGCATTACTCGTTCAGCAACGTCAGCAGAGTTCG < 1:1734882/76‑1 CATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCG > 2:2109742/1‑76 CATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCG < 1:1545282/76‑1 CATTTCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCG > 1:194847/1‑76 TTCGCCCCCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGT < 1:867787/76‑1 TCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTT > 2:1739218/1‑76 TCGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTT > 1:933846/1‑76 CGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTC < 2:1684384/76‑1 CGCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTC < 2:1547769/76‑1 GCCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCG < 2:237290/76‑1 CCACCGTAGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGC < 2:1205752/76‑1 AGATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCA < 1:950366/76‑1 ATGGCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATC < 2:744626/76‑1 GCGTCTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGC < 2:1870555/76‑1 CTTCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCA > 2:647867/1‑76 TCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACA > 2:1847764/1‑76 TCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACA > 2:1240796/1‑76 TCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACA > 2:804877/1‑76 TCCTTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACA < 2:1205431/76‑1 TTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCA > 2:1940176/1‑76 TTGCGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCA > 2:292281/1‑76 CGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCG > 1:1922964/1‑76 TGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2031777‑2031849‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCG > REL606/2054713‑2054786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |