| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,031,850 | Δ22,863 bp | [manB]–wcaJ | 22 genes [manB], manC, insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2031850–2031888 | 2054712 | 22825–22863 | 55 [0] | [1] 56 | [manB]–wcaJ | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2031849 | 0 (0.000) | 55 (0.830) | 41/148 | 0.6 | 99.1% | coding (949/1365 nt) | manB | Phosphomannomutase |
| ? | REL606 | 2054713 = | 1 (0.020) | intergenic (‑42/+13) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase | |||||
TTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCG > REL606/2054640‑2054786 | tgtcgcagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGa > 1:99457‑M2/74‑76 (MQ=255) gcagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGAt < 2:1255474‑M2/7‑1 (MQ=255) cagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATc > 1:173587‑M2/69‑76 (MQ=255) cagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATc < 1:877114‑M2/8‑1 (MQ=255) cagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATc < 1:1013378‑M2/8‑1 (MQ=255) cagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATc > 1:1442972‑M2/69‑76 (MQ=255) cagtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATc > 1:1095707‑M2/69‑76 (MQ=255) agtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAGGATcc > 2:2017697‑M2/68‑76 (MQ=255) agtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATcc < 1:1218445‑M2/9‑1 (MQ=255) gtaagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCg < 2:174858‑M2/10‑1 (MQ=255) taagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGa > 1:1780303‑M2/66‑76 (MQ=255) taagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGa > 2:1806722‑M2/66‑76 (MQ=255) aagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGAc < 2:157967‑M2/12‑1 (MQ=255) aagcgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgccttccttgcgGGAAGATCCGAc > 2:2131669‑M2/65‑76 (MQ=255) cgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACAtt < 2:1100292‑M2/15‑1 (MQ=255) cgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACAtt < 1:2030138‑M2/15‑1 (MQ=255) cgaaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACAtt < 1:865473‑M2/15‑1 (MQ=255) aaatcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTAc > 1:928423‑M2/60‑76 (MQ=255) tcacggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCg < 1:1975217‑M2/20‑1 (MQ=255) ggaaatagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCa < 1:1475067‑M2/24‑1 (MQ=255) tagtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAAc < 2:1231352‑M2/29‑1 (MQ=255) agtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACg > 1:961761‑M2/47‑76 (MQ=255) gtggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGt > 1:888044‑M2/46‑76 (MQ=255) ggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTca > 2:142953‑M2/44‑76 (MQ=255) ggtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTca < 2:762242‑M2/33‑1 (MQ=255) gtgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTcag > 2:96850‑M2/43‑76 (MQ=255) tgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTcagc > 2:1920277‑M2/42‑76 (MQ=255) tgggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGCcagc > 1:1481348‑M2/42‑76 (MQ=255) gggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTcagca > 1:245180‑M2/41‑76 (MQ=255) ggcgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTcagcag < 1:884228‑M2/37‑1 (MQ=255) cgctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCagag > 1:645856‑M2/38‑76 (MQ=255) ctcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgtt > 2:1761972‑M2/36‑76 (MQ=255) tcatttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttc < 1:1522015‑M2/42‑1 (MQ=255) catttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGGCATTACTCGTTCAGCAACGTCAGCAGAgttcg < 1:1734882‑M2/43‑1 (MQ=255) catttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcg < 1:1545282‑M2/43‑1 (MQ=255) catttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcg > 2:2109742‑M2/34‑76 (MQ=255) catttcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcg > 1:194847‑M2/34‑76 (MQ=255) ttcgcccccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgt < 1:867787‑M2/46‑1 (MQ=255) tcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgtt > 1:933846‑M2/30‑76 (MQ=255) tcgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgtt > 2:1739218‑M2/30‑76 (MQ=255) cgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 2:1684384‑M2/48‑1 (MQ=255) cgccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttc < 2:1547769‑M2/48‑1 (MQ=255) gccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcg < 2:237290‑M2/49‑1 (MQ=255) ccaccgtagatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAgttcgcgttcgc < 2:1205752‑M2/50‑1 (MQ=255) cccTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCtt < 2:110591/76‑1 (MQ=255) agatggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCa < 1:950366‑M2/57‑1 (MQ=255) atggcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATc < 2:744626‑M2/59‑1 (MQ=255) gcgtcttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGc < 2:1870555‑M2/62‑1 (MQ=255) cttccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGca > 2:647867‑M2/11‑76 (MQ=255) tccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcaca > 2:1240796‑M2/9‑76 (MQ=255) tccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcaca > 2:1847764‑M2/9‑76 (MQ=255) tccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcaca < 2:1205431‑M2/68‑1 (MQ=255) tccttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGcaca > 2:804877‑M2/9‑76 (MQ=255) ttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCa > 2:1940176‑M2/6‑76 (MQ=255) ttgcgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCa > 2:292281‑M2/6‑76 (MQ=255) cgGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACcg > 1:1922964‑M2/3‑76 (MQ=255) | TTCGCTCGCTCGCGCTTTTTTAGATTTGTCATCGTTGTTCCTGTTATTAGCCCCTTACCCGCAGTGGGGTAAGGGAAGATCCGACATTACTCGTTCAGCAACGTCAGCAGAGTTCGCGTTCGCGCTTCCATCAGCGGCACATCACCG > REL606/2054640‑2054786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |