| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,031,850 | Δ22,863 bp | [manB]–wcaJ | 22 genes [manB], manC, insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2031850–2031888 | 2054712 | 22825–22863 | 55 [0] | [1] 56 | [manB]–wcaJ | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2031849 | 0 (0.000) | 55 (0.830) | 41/148 | 0.6 | 99.1% | coding (949/1365 nt) | manB | Phosphomannomutase |
| ? | REL606 | 2054713 = | 1 (0.020) | intergenic (‑42/+13) | wcaJ/cpsG | predicted UDP‑glucose lipid carrier transferase/phosphomannomutase | |||||
TGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATCACCGGAGTGCCGCCCGCGGCGGTCACCACATCAA > REL606/2031777‑2031923 | tGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGgga > 1:99457‑M1/1‑73 (MQ=255) gCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagat < 2:1255474‑M1/76‑8 (MQ=255) cAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatc > 1:1095707‑M1/1‑68 (MQ=255) cAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatc > 1:1442972‑M1/1‑68 (MQ=255) cAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatc > 1:173587‑M1/1‑68 (MQ=255) cAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatc < 1:1013378‑M1/76‑9 (MQ=255) cAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatc < 1:877114‑M1/76‑9 (MQ=255) aGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaggatcc > 2:2017697‑M1/1‑67 (MQ=255) aGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatcc < 1:1218445‑M1/76‑10 (MQ=255) gTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccg < 2:174858‑M1/76‑11 (MQ=255) tAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccga > 2:1806722‑M1/1‑65 (MQ=255) tAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccga > 1:1780303‑M1/1‑65 (MQ=255) aaGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgac < 2:157967‑M1/76‑13 (MQ=255) aaGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGCCTTCCTTGCGggaagatccgac > 2:2131669‑M1/1‑64 (MQ=255) cGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacatt < 2:1100292‑M1/76‑16 (MQ=255) cGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacatt < 1:865473‑M1/76‑16 (MQ=255) cGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacatt < 1:2030138‑M1/76‑16 (MQ=255) aaaTCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattac > 1:928423‑M1/1‑59 (MQ=255) tCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcg < 1:1975217‑M1/76‑21 (MQ=255) ggAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttca < 1:1475067‑M1/76‑25 (MQ=255) tAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaac < 2:1231352‑M1/76‑30 (MQ=255) aGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacg > 1:961761‑M1/1‑46 (MQ=255) gtggtgGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgt > 1:888044‑M1/1‑45 (MQ=255) ggtggGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtca < 2:762242‑M1/76‑34 (MQ=255) ggtggGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtca > 2:142953‑M1/1‑43 (MQ=255) gtggGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcag > 2:96850‑M1/1‑42 (MQ=255) tggGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagc > 2:1920277‑M1/1‑41 (MQ=255) tggGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgccagc > 1:1481348‑M1/1‑41 (MQ=255) gggCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagca > 1:245180‑M1/1‑40 (MQ=255) ggCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcag < 1:884228‑M1/76‑38 (MQ=255) cgcTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagag > 1:645856‑M1/1‑37 (MQ=255) cTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagtt > 2:1761972‑M1/1‑35 (MQ=255) tCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttc < 1:1522015‑M1/76‑43 (MQ=255) cATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccggcattactcgttcagcaacgtcagcagagttcg < 1:1734882‑M1/76‑44 (MQ=255) cATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcg > 2:2109742‑M1/1‑33 (MQ=255) cATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcg < 1:1545282‑M1/76‑44 (MQ=255) cATTTCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcg > 1:194847‑M1/1‑33 (MQ=255) ttCGCCCCCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgt < 1:867787‑M1/76‑47 (MQ=255) tCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgtt > 2:1739218‑M1/1‑29 (MQ=255) tCGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgtt > 1:933846‑M1/1‑29 (MQ=255) cGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttc < 2:1684384‑M1/76‑49 (MQ=255) cGCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttc < 2:1547769‑M1/76‑49 (MQ=255) gCCACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcg < 2:237290‑M1/76‑50 (MQ=255) ccACCGTAGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgc < 2:1205752‑M1/76‑51 (MQ=255) aGATGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttcca < 1:950366‑M1/76‑58 (MQ=255) aTGGCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatc < 2:744626‑M1/76‑60 (MQ=255) gCGTCTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagc < 2:1870555‑M1/76‑63 (MQ=255) cTTCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggca > 2:647867‑M1/1‑10 (MQ=255) tCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcaca > 2:1847764‑M1/1‑8 (MQ=255) tCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcaca > 2:1240796‑M1/1‑8 (MQ=255) tCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcaca > 2:804877‑M1/1‑8 (MQ=255) tCCTTGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcaca < 2:1205431‑M1/76‑69 (MQ=255) ttGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcacatca > 2:1940176‑M1/1‑5 (MQ=255) ttGCGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcacatca > 2:292281‑M1/1‑5 (MQ=255) cGggaagatccgacattactcgttcagcaacgtcagcagagttcgcgttcgcgcttccatcagcggcacatcaccg > 1:1922964‑M1/1‑2 (MQ=255) | TGTCGCAGTAAGCGAAATCACGGAAATAGTGGTGGGCGCTCATTTCGCCACCGTAGATGGCGTCTTCCTTGCGCATACGTTCTTTAATAAAGGCGTGTCCGGTTTTCGACATCACCGGAGTGCCGCCCGCGGCGGTCACCACATCAA > REL606/2031777‑2031923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |