| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4256585 = | 73 (1.080) | 51 (0.780) | 42/146 | 0.5 | 43.6% | coding (184/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | REL606 | = 4375294 | 61 (0.930) | coding (1075/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
CTTAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4256661‑4256585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGACCGA < REL606/4375294‑4375220 CTTAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAA < 2:1857449/76‑1 TTAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAAT < 1:1088005/76‑1 TAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATG > 2:555196/1‑76 TAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATG < 2:527023/76‑1 AACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGT > 1:1167971/1‑76 ACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTA < 2:2065003/76‑1 CGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTAT > 1:790515/1‑76 GTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATT > 1:1714177/1‑76 GTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATT > 1:1567695/1‑76 TATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTT > 2:800189/1‑76 TATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTT < 1:969564/76‑1 TATCCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTT < 1:1642350/76‑1 ATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTC < 1:1569238/76‑1 CCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCC < 1:1152881/76‑1 CCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCA < 2:447704/76‑1 TTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAAT > 1:961159/1‑76 TTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAAT < 1:1306330/76‑1 GGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGCATTTCGCCAATGCG > 1:893412/1‑76 CACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAA < 1:1864546/76‑1 CACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAA < 1:833229/76‑1 CACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAA > 2:1275757/1‑76 CGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACT < 1:1263591/76‑1 GCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTG < 2:1252908/76‑1 GCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTG < 1:1114068/76‑1 CCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGA > 2:35402/1‑76 CCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGA < 1:1203603/76‑1 CAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGAC > 2:2116776/1‑76 CAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGAC > 2:1239144/1‑76 AAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACT > 2:1589576/1‑76 AACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTG < 2:890900/76‑1 CTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCA < 2:515035/76‑1 TCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATA < 1:1131147/76‑1 CACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATAC < 2:95842/76‑1 CACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATAC > 2:655951/1‑76 ACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACT < 1:491841/76‑1 GGTCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGC > 1:2051441/1‑76 TCGCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTA > 1:1277725/1‑76 GCCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACA < 1:342232/76‑1 CCAGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACAT > 1:1938434/1‑76 AGCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCA < 1:1090329/76‑1 GCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCAT < 1:1903842/76‑1 GCGGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCAT < 1:1642493/76‑1 GGAATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATAC > 1:272618/1‑76 ATGCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCT < 1:313902/76‑1 GCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTAC > 1:562201/1‑76 GCCAATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTAC > 1:1888180/1‑76 ATACGCTGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGC > 2:1299359/1‑76 TGAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTTGCTACATCATACCCTACCCGCTGGGAA > 1:1008990/1‑76 GAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAAT > 1:1129823/1‑76 GAGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAAT > 1:1979534/1‑76 AGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATG < 2:96916/76‑1 AGCAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATG < 1:1887226/76‑1 CAATGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGAC < 2:411172/76‑1 TGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGACCGA > 2:282850/1‑76 TGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGACCGA > 1:828414/1‑76 TGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGACCGA < 1:555196/76‑1 CTTAACGTATGCCCTTCGGGCAACACGCCAAACGCTTCACCAATGGTCGCCAGCGGAATGCCAATACGCTGAGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4256661‑4256585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGTATTTCGCCAATGCGTTGCAACTGACTGATCATACTGGTCGCTACATCATACCCTACCCGCTGGGAATGACCGA < REL606/4375294‑4375220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |