| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4256585 = | 73 (1.080) | 51 (0.780) | 42/146 | 0.5 | 43.6% | coding (184/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | REL606 | = 4375294 | 61 (0.930) | coding (1075/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 128 total aligned reads displayed.
ATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAA > REL606/4256510‑4256660 | tcggtcattcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaataca > 2:282850‑M1/76‑76 (MQ=255)tcggtcattcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaataca < 1:555196‑M1/1‑1 (MQ=255)aTTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCaaaa > 2:384463/1‑76 (MQ=255)aTTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCaaaa < 2:1684838/76‑1 (MQ=255) tACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAAtt < 1:1052519/76‑1 (MQ=255) tACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAAtt < 1:1066668/76‑1 (MQ=255) gtcattcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTg < 2:411172‑M1/4‑1 (MQ=255) ccAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGc < 1:1100420/76‑1 (MQ=255) ccAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGc > 1:692354/1‑76 (MQ=255) cattcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCt < 2:96916‑M1/6‑1 (MQ=255) cattcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCt < 1:1887226‑M1/6‑1 (MQ=255) cAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt > 2:360409/1‑76 (MQ=255) attcccagcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTc > 1:1979534‑M1/70‑76 (MQ=255) aGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTc < 2:1740819/76‑1 (MQ=255) ttcccagcgggtagggtatgatgtagcaaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCa > 1:1008990‑M1/69‑76 (MQ=255) tATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAg > 1:1981104/1‑76 (MQ=255) tATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAg < 2:270847/76‑1 (MQ=255) tCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCg < 1:1061572/76‑1 (MQ=255) cGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTa > 1:1857594/1‑76 (MQ=255) gcgggtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTAt > 2:1299359‑M1/63‑76 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg > 1:1989547/1‑76 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg > 1:1219640/1‑76 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg < 2:683526/76‑1 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg > 1:1559370/1‑76 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg < 2:1368737/76‑1 (MQ=255) aaCAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTg < 2:1201069/76‑1 (MQ=255) gtagggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGc > 1:562201‑M1/59‑76 (MQ=255) aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCa < 2:1197465/76‑1 (MQ=255) aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCa < 1:811176/76‑1 (MQ=255) aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCa < 1:906037/76‑1 (MQ=255) aGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCa < 2:1679254/76‑1 (MQ=255) agggtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCAt < 1:313902‑M1/20‑1 (MQ=255) gtatgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTcc > 1:272618‑M1/54‑76 (MQ=255) atgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGc < 1:1903842‑M1/25‑1 (MQ=255) atgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGc < 1:1642493‑M1/25‑1 (MQ=255) aaTCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGc > 1:1775393/1‑76 (MQ=255) tgatgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCt < 1:1090329‑M1/26‑1 (MQ=255) aTCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 2:547926/76‑1 (MQ=255) aTCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt > 1:2055403/1‑76 (MQ=255) tgtagcgaccagtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGc < 1:342232‑M1/29‑1 (MQ=255) aGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGc > 2:1790536/1‑76 (MQ=255) gcggcgATATAAACGTGATGTGTTGCGATAGGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCg < 1:960764/76‑1 (MQ=255) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCAtt > 1:869485/1‑76 (MQ=255) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCAtt > 1:1928703/1‑76 (MQ=255) ataAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTgg > 1:1391971/1‑76 (MQ=255) agtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGt < 1:491841‑M1/39‑1 (MQ=255) gtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg > 2:655951‑M1/37‑76 (MQ=255) gtatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg < 2:95842‑M1/40‑1 (MQ=255) aaaCGTGATGTGCTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg < 1:1180923/76‑1 (MQ=255) tatgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGa < 1:1131147‑M1/41‑1 (MQ=255) tgatcagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAg < 2:515035‑M1/43‑1 (MQ=255) cGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAg < 1:736751/76‑1 (MQ=255) gATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt > 2:784780/1‑76 (MQ=255) cagtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGtt < 2:890900‑M1/47‑1 (MQ=255) gtgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg < 2:1418207/76‑1 (MQ=255) gtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg > 2:2116776‑M1/28‑76 (MQ=255) gtcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg > 2:1239144‑M1/28‑76 (MQ=255) tcagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTgg < 1:1203603‑M1/50‑1 (MQ=255) gtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGc < 1:1896036/76‑1 (MQ=255) gtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGc > 2:1293548/1‑76 (MQ=255) cagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGc < 1:1114068‑M1/51‑1 (MQ=255) cagttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGc < 2:1252908‑M1/51‑1 (MQ=255) agttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCg < 1:1263591‑M1/52‑1 (MQ=255) ttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtg < 1:1864546‑M1/54‑1 (MQ=255) ttgcaacgcattggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtg < 1:833229‑M1/54‑1 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgtg < 2:1208452/76‑1 (MQ=255) atatGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTg > 2:859628/1‑76 (MQ=255) atGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGcc > 2:1326108/1‑76 (MQ=255) tGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGccc > 2:1252760/1‑76 (MQ=255) cgcattggcgaaatgcATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGccc > 1:893412‑M1/17‑76 (MQ=255) gTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg > 1:146779/1‑76 (MQ=255) ttGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGa > 1:762034/1‑76 (MQ=255) ttGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGa > 1:724848/1‑76 (MQ=255) ngCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGaa > 1:1658227/2‑76 (MQ=255) attggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGaa < 1:1306330‑M1/63‑1 (MQ=255) attggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGaa > 1:961159‑M1/14‑76 (MQ=255) gCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAg < 1:1669072/76‑1 (MQ=255) cAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAgg < 1:960299/76‑1 (MQ=255) ggcgaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAggg < 1:1152881‑M1/66‑1 (MQ=255) aTTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGc > 2:1856405/1‑76 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa > 1:1130607/1‑76 (MQ=255) tATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCAt < 2:1796936/76‑1 (MQ=255) gaaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCAt < 1:1569238‑M1/69‑1 (MQ=255) aaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa > 2:800189‑M1/7‑76 (MQ=255) aaatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa < 1:969564‑M1/70‑1 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa < 2:963124/76‑1 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa > 2:1572523/1‑76 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATa < 2:224793/76‑1 (MQ=255) tCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATAc < 1:1902791/76‑1 (MQ=255) aatacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATAc > 1:1567695‑M1/6‑76 (MQ=255) cAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACg < 2:1684729/76‑1 (MQ=255) cAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACg > 2:1364143/1‑76 (MQ=255) cAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACg > 2:1170965/1‑76 (MQ=255) atacATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACg > 1:790515‑M1/5‑76 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGt < 2:911797/76‑1 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGt < 1:632196/76‑1 (MQ=255) aaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt < 1:1420020/76‑1 (MQ=255) cATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTa < 2:527023‑M1/75‑1 (MQ=255) cATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTa > 2:555196‑M1/2‑76 (MQ=255) ATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTaa < 1:1088005‑M1/76‑1 (MQ=255) | ATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAA > REL606/4256510‑4256660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |