| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4256585 = | 73 (1.080) | 51 (0.780) | 42/146 | 0.5 | 43.6% | coding (184/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | REL606 | = 4375294 | 61 (0.930) | coding (1075/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 120 total aligned reads displayed.
TTCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGAAACCG > REL606/4375219‑4375369 | ttCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATAc < 1:2098675/76‑1 (MQ=255)ttCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATAc < 1:486067/76‑1 (MQ=255)ttCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATAc > 1:160597/1‑76 (MQ=255)ttCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATAc < 1:1408273/76‑1 (MQ=255)ttCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATAc < 2:1188183/76‑1 (MQ=255) tCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACa > 2:282850‑M2/1‑75 (MQ=255) tCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACa > 1:828414‑M2/1‑75 (MQ=255) gTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattg < 2:411172‑M2/76‑5 (MQ=255) tCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATaaa < 2:501317/76‑1 (MQ=255) tCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATaaa < 2:1748646/76‑1 (MQ=255) tCATTCCCAGCGGGTAGGGCATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATaaa > 1:955612/1‑76 (MQ=255) cATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgct < 1:1887226‑M2/76‑7 (MQ=255) cATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgct < 2:96916‑M2/76‑7 (MQ=255) cATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAAc > 2:971214/1‑76 (MQ=255) cATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAAc < 2:1615418/76‑1 (MQ=255) aTTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctc > 1:1129823‑M2/1‑69 (MQ=255) ttCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGc < 2:1205156/76‑1 (MQ=255) ttCCCAGCGGGTAGGGTATGATGTAGCAACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctca > 1:1008990‑M2/1‑68 (MQ=255) tCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGcc > 1:1337027/1‑76 (MQ=255) ccAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGa < 1:520725/76‑1 (MQ=255) aGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGAcc < 1:1527110/76‑1 (MQ=255) aGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGAcc > 1:716482/1‑76 (MQ=255) gCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtat > 2:1299359‑M2/1‑62 (MQ=255) cGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAg < 2:1313117/76‑1 (MQ=255) cGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAg > 2:1469972/1‑76 (MQ=255) cGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAg > 1:638789/1‑76 (MQ=255) ggtagggtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAgga < 2:1488476/76‑3 (MQ=255) gtagggtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggc > 1:562201‑M2/1‑58 (MQ=255) tagggtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAaca < 1:797418/76‑1 (MQ=255) agggtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAacac < 1:1836409/76‑1 (MQ=255) acngtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAacac > 2:1502868/4‑76 (MQ=255) ggtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACAcgc < 1:1975171/76‑1 (MQ=255) gtaTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattcc > 1:272618‑M2/1‑53 (MQ=255) taTGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGa > 1:1923556/1‑76 (MQ=255) atgatgTAGCGACCAGTATGATTAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAAAACGCGAg > 2:2023170/1‑76 (MQ=255) atgatgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgc < 1:1903842‑M2/76‑26 (MQ=255) atgatgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgc < 1:1642493‑M2/76‑26 (MQ=255) tgatgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgct < 1:1090329‑M2/76‑27 (MQ=255) atgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctgg > 1:1938434‑M2/1‑48 (MQ=255) atgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGtct < 2:1326780/76‑1 (MQ=255) tgTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggc < 1:342232‑M2/76‑30 (MQ=255) tAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcga > 1:1277725‑M2/1‑45 (MQ=255) tAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCgg > 1:1888602/1‑76 (MQ=255) aGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGc > 2:198110/1‑76 (MQ=255) aGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGc > 1:766340/1‑76 (MQ=255) gCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgacc > 1:2051441‑M2/1‑43 (MQ=255) gCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCg > 1:1311165/1‑76 (MQ=255) gACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGtt > 1:959259/1‑76 (MQ=255) aCCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTc < 2:1514423/76‑1 (MQ=255) aCCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTc > 1:958984/1‑76 (MQ=255) cAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTg > 2:151321/1‑76 (MQ=255) aGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggt < 1:491841‑M2/76‑40 (MQ=255) gTATGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtg < 2:95842‑M2/76‑41 (MQ=255) aTGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGtt > 1:8516/1‑76 (MQ=255) tGATCAGTCAGTTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaag < 2:515035‑M2/76‑44 (MQ=255) tGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTc > 1:1100976/1‑76 (MQ=255) cagtcagtTGCAACGCATTGGCGAGATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCg < 2:1780941/76‑1 (MQ=255) cagtcagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtt < 2:890900‑M2/76‑48 (MQ=255) agtcagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCgg > 1:295689/1‑76 (MQ=255) gtcagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttg > 2:2116776‑M2/1‑27 (MQ=255) gtcagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttg > 2:1239144‑M2/1‑27 (MQ=255) tcagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttgg > 2:35402‑M2/1‑26 (MQ=255) tcagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttgg < 1:1203603‑M2/76‑51 (MQ=255) tcagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGat > 1:1315571/1‑76 (MQ=255) tcagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGat > 1:1559220/1‑76 (MQ=255) tcagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGat < 1:1474071/76‑1 (MQ=255) cagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggc < 2:1252908‑M2/76‑52 (MQ=255) cagtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggc < 1:1114068‑M2/76‑52 (MQ=255) cagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGata > 2:1784006/1‑76 (MQ=255) cagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGata > 2:1347744/1‑76 (MQ=255) cagtTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGata > 2:1363266/1‑76 (MQ=255) agtTGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcg < 1:1263591‑M2/76‑53 (MQ=255) ttGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtg < 1:1864546‑M2/76‑55 (MQ=255) ttGCAACGCATTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtg < 1:833229‑M2/76‑55 (MQ=255) ttGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATcc > 1:925621/1‑76 (MQ=255) gCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCg < 2:160597/76‑1 (MQ=255) cGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAg > 2:1818213/1‑76 (MQ=255) gCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGt > 1:855052/1‑76 (MQ=255) aTTGGCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaa < 1:1306330‑M2/76‑64 (MQ=255) ggCGAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaaggg < 1:1152881‑M2/76‑67 (MQ=255) ggCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTgg > 2:411379/1‑76 (MQ=255) cGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTc < 1:1760412/76‑1 (MQ=255) gAAATACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcat < 1:1569238‑M2/76‑70 (MQ=255) gAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGGTATCCCGTCAGTACTGGTCg > 1:1363203/1‑76 (MQ=255) aaaTACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaaggggata < 1:1642350‑M2/76‑71 (MQ=255) aaaTACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcata < 1:969564‑M2/76‑71 (MQ=255) aaaTACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcata > 2:800189‑M2/1‑6 (MQ=255) aaaTACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGa > 1:325598/1‑76 (MQ=255) aaTACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatac > 1:1567695‑M2/1‑5 (MQ=255) aaTACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatac > 1:1714177‑M2/1‑5 (MQ=255) aaTACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCa < 2:272098/64‑1 (MQ=255) aaTACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCa > 1:272098/1‑64 (MQ=255) tACattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgt < 2:2065003‑M2/76‑74 (MQ=255) tACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGAAAc < 1:561232/76‑1 (MQ=255) aCattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgtt > 1:1167971‑M2/1‑2 (MQ=255) aCATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGAAAcc < 2:638789/76‑1 (MQ=255) aCATAAACGCCGACCAGAACACGCGAGTCTCGGCCTTCTGCGTTCGCCGGGTATCCCGTCAGGACTGGTCGAAAcc > 1:1312000/1‑76 (MQ=255) cattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgtta < 2:527023‑M2/76‑76 (MQ=255) cattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgtta > 2:555196‑M2/1‑1 (MQ=255) cATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGAAACCg < 1:956922/76‑1 (MQ=255) | TTCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGCCGACCAGAACACGCGAGTCTCGGCGTTCTGCGTTCGCCGGATATCCCGTCAGTACTGGTCGAAACCG > REL606/4375219‑4375369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |