| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1519141 = | 66 (1.020) | 5 (0.080) | 4/138 | 7.6 | 6.9% | coding (725/957 nt) | yddK | hypothetical protein |
| ? | REL606 | 1519345 = | 74 (1.240) | coding (521/957 nt) | yddK | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1519217‑1519141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttactGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTG > REL606/1519345‑1519419 CTCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTAC > 1:1341347/1‑76CTCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTAC > 1:811490/1‑76CTCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTAC < 2:29803/76‑1 TCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACT < 1:1319996/76‑1 TCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACT < 2:20464/76‑1 CTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACTGATGAAAG < 2:377061/76‑1 GGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACTGATGAAAGCC < 2:1806836/76‑1 CCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACTGATGAAAGCCTATCTATA < 2:1322041/76‑1 TAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACTGATGAAAGCCTATCTATATCAATAT < 2:568585/76‑1 TAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACTGATGAAAGCCTATCTATATCAATAT < 2:931803/76‑1 TACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTT < 2:198140/76‑1 TGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTG > 1:279010/1‑76 TGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTG > 2:1274160/1‑76 CTCTTACTGCTGGATCTATCCCATAATAAACTAACAAGTTTACACAATGACTTATTTCCCAACTTGAATACGTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1519217‑1519141‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttactGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTG > REL606/1519345‑1519419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |