| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039999 | 65 (1.060) | 10 (0.180) | 9/138 | 4.7 | 15.2% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 52 (0.920) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGCTATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2039920‑2039999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaataATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATAG < REL606/2040151‑2040077 CCGCTATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGG > 1:122904/1‑76CCGCTATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGG > 1:625054/1‑76 TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATA > 1:1085544/1‑76 TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATA > 1:1853994/1‑76 AACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGT > 2:307051/1‑76 GATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAG > 2:1390811/1‑76 AGAATAATCATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGA > 2:785884/1‑76 GAATAATCATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGGGGTATTGAT > 2:830982/1‑76 AATAATCATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATA > 2:1364797/1‑76 ATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGA > 2:1673651/1‑76 ATCGTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGA > 2:967299/1‑76 GTTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTA > 2:259797/1‑76 TTACTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTAT > 2:235585/1‑76 CTGGAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATT > 2:1184089/1‑76 GAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCAT > 1:507421/1‑76 GAATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCAT < 1:318362/76‑1 ATAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATAT > 1:1371576/1‑76 TAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATA < 2:1391821/76‑1 TAATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATA < 2:1391833/76‑1 AATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATAG > 2:239556/1‑76 AATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATAG > 1:1238438/1‑76 CCGCTATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2039920‑2039999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaataATGTAAGGATTGATGATTTTTGCGTGTTTTCAGCTGGAGAGGGTGGTATTGATATACACGATTATATTCATATAG < REL606/2040151‑2040077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |