| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039999 | 65 (1.060) | 10 (0.180) | 9/138 | 4.7 | 15.2% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 52 (0.920) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATAC > REL606/2039924‑2040074 | tATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAata > 1:1085544/1‑76 (MQ=255)tATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAata > 1:1853994/1‑76 (MQ=255) aTGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAatat > 1:1628147/1‑76 (MQ=255) aTGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAatat > 2:304430/1‑76 (MQ=255) atattcgtatattcACTTGGAACTACTGGCTTAGACATATAATTGCCAGAATAATCATCGTTACTGGACTATATTg > 1:20053/1‑76 (MQ=255) atattcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGACTAATCATCGTTACTGGAATATATTg > 1:20064/1‑76 (MQ=255) tattcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTga < 2:1755944/76‑1 (MQ=255) attcgtatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTgag < 1:259093/76‑1 (MQ=255) tatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCg > 1:1553277/1‑76 (MQ=255) tatattcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCg < 1:1293006/76‑1 (MQ=255) attcACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCgaga > 1:484544/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt > 1:307051/1‑76 (MQ=255) aaCTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGttt < 2:485049/76‑1 (MQ=255) ctactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGc > 1:881333/1‑76 (MQ=255) ctactGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGc > 1:291234/1‑76 (MQ=255) ctGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTa < 2:1332544/76‑1 (MQ=255) ctGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTa < 2:604649/76‑1 (MQ=255) ctGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTa < 2:1196459/76‑1 (MQ=255) ctGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTa < 2:693500/76‑1 (MQ=255) tGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAg < 1:1892603/76‑1 (MQ=255) gATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCCTAGTc > 1:1390811/1‑76 (MQ=255) aTTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCa > 2:1263523/1‑76 (MQ=255) aTTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCa > 1:1174831/1‑76 (MQ=255) aTTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCa > 1:774455/1‑76 (MQ=255) tAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGa < 1:730566/76‑1 (MQ=255) aGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCaaag < 2:984768/76‑4 (MQ=255) aGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCaaag < 2:984765/76‑4 (MQ=255) aGACATAGAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCaaag < 2:470895/76‑4 (MQ=255) gACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGata < 1:591412/76‑1 (MQ=255) atatatAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:1050606/74‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:443379/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:443354/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:420582/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:1050609/76‑1 (MQ=255) aCATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGatat < 1:237760/76‑1 (MQ=255) tataATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGt > 1:1216673/1‑76 (MQ=255) ataATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGtt < 2:487926/76‑1 (MQ=255) ataATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGtt > 2:1883938/1‑76 (MQ=255) tgcttGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTa > 2:464159/4‑76 (MQ=255) taATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTa < 1:1264890/76‑1 (MQ=255) taATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTa > 2:1686261/1‑76 (MQ=255) aTTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACt > 1:1144182/1‑76 (MQ=255) aTTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACt > 1:281226/1‑76 (MQ=255) aTTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACt < 1:553355/76‑1 (MQ=255) ttGCCAGAATAATCAGCGTTACTGGAATATATTGAGACGCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACtt < 1:652103/76‑1 (MQ=255) tGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACttt > 1:1549724/1‑76 (MQ=255) ccAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTc < 1:304430/76‑1 (MQ=255) aGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCt > 1:785884/1‑76 (MQ=255) gAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCtt > 1:830982/1‑76 (MQ=255) gAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCtt < 2:1016880/76‑1 (MQ=255) aataatCATCGTTACTGGAATATATTGAGACTCGAGCTGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCttt > 1:1364797/1‑76 (MQ=255) atcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaata > 1:1673651/1‑76 (MQ=255) atcGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaata > 1:967299/1‑76 (MQ=255) cGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCaataat > 2:1938822/1‑76 (MQ=255) gTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAAtt > 1:259797/1‑76 (MQ=255) ttACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTg > 1:1904183/1‑76 (MQ=255) ttACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTg > 1:235585/1‑76 (MQ=255) tACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTga < 1:344038/76‑1 (MQ=255) tgggAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTgaag > 2:365788/3‑76 (MQ=255) cTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTgaag > 1:1184089/1‑76 (MQ=255) ggAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTgaagaa > 2:148237/1‑76 (MQ=255) gAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAat < 1:1314262/76‑1 (MQ=255) aaTATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAata > 2:104087/1‑76 (MQ=255) atatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAatat < 2:1496726/76‑1 (MQ=255) tatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAAtata > 1:1768755/1‑76 (MQ=255) tatatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAAtata < 1:1134737/76‑1 (MQ=255) atatTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATAc < 1:297141/76‑1 (MQ=255) | TATGTATATTCGTATATTCACTTGGAACTACTGGATTAGACATATAATTGCCAGAATAATCATCGTTACTGGAATATATTGAGACTCGAGATGAAATGTTTGCGTAGTCAGATATAGTTACTTTTCCTTTGCCAATAATTGAAGAATATAC > REL606/2039924‑2040074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |