| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2039999 | 65 (1.060) | 10 (0.180) | 9/138 | 4.7 | 15.2% | coding (130/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | = 2040151 | 52 (0.920) | intergenic (‑23/+120) | vioB/vioA | VioB, involved in dTDP‑N‑acetylviosamine synthesis/VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAA > REL606/2040077‑2040220 | cTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACatt < 1:1238438/76‑1 (MQ=255)cTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACatt < 2:239556/76‑1 (MQ=255) tataTGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACatta > 2:1391821/1‑76 (MQ=255) tataTGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACatta > 2:1391833/1‑76 (MQ=255) atatGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACattat < 1:1371576/76‑1 (MQ=255) atGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTc < 1:507421/76‑1 (MQ=255) atGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTc > 1:318362/1‑76 (MQ=255) aaTATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTccag < 2:1184089/76‑3 (MQ=255) aaTATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCa < 1:365788/76‑1 (MQ=255) aaTATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCa > 1:219511/1‑76 (MQ=255) tataATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAAt < 1:903121/76‑1 (MQ=255) aataATCATGGATAGCAATACCACCCTCTCCAGGGGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAAt < 1:1630399/75‑1 (MQ=255) ataATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATa > 1:1558831/1‑76 (MQ=255) ataATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATa < 1:1620114/76‑1 (MQ=255) ataATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATa < 1:149352/76‑1 (MQ=255) tCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTaa < 1:1807278/76‑1 (MQ=255) tCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTaa < 2:1155675/76‑1 (MQ=255) tCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTaa < 2:1155681/76‑1 (MQ=255) tCGTGTATATCAATACCACCCTCACCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTaa < 2:1155696/76‑1 (MQ=255) gtgtATATCAATACCACCCTCTCCAGCTGGAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAata < 1:1104451/76‑1 (MQ=255) tgtATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAatat > 1:857239/1‑76 (MQ=255) gtATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtatt < 1:1360010/76‑1 (MQ=255) tataTCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtatta > 1:574605/1‑76 (MQ=255) atatCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAAtattat < 1:753809/76‑1 (MQ=255) tatCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATc > 2:927285/1‑76 (MQ=255) cAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATcaca < 1:1628137/76‑1 (MQ=255) cAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATcaca < 1:1376247/76‑1 (MQ=255) cAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATcaca < 1:749824/76‑1 (MQ=255) cAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATcaca < 1:1161996/76‑1 (MQ=255) aaTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCacac < 1:275643/76‑1 (MQ=255) aTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACAcc < 1:1745175/76‑1 (MQ=255) aTACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACAcc < 1:265459/76‑1 (MQ=255) accaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCa < 1:823931/76‑1 (MQ=255) accaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCa < 1:823917/76‑1 (MQ=255) ccaccCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCAt < 1:334637/76‑1 (MQ=255) accCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaa < 1:1134575/76‑1 (MQ=255) ctctCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATaaaaa < 1:523167/76‑1 (MQ=255) ctcCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGa < 1:177833/76‑1 (MQ=255) ctcCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGa < 1:177847/76‑1 (MQ=255) tcCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGAt < 1:508612/76‑1 (MQ=255) ccAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATg > 1:3378/1‑76 (MQ=255) ccAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATg < 1:241330/76‑1 (MQ=255) aGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGcc > 2:1176806/1‑76 (MQ=255) aGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGcc > 2:1176800/1‑76 (MQ=255) gAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTAt > 2:722714/1‑76 (MQ=255) aaaCACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCt < 1:308613/76‑1 (MQ=255) cacGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGat < 1:1795722/76‑1 (MQ=255) cacGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGat < 1:1795754/76‑1 (MQ=255) acGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGata < 1:1338315/76‑1 (MQ=255) acGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGact < 2:1092354/76‑3 (MQ=255) aaaaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATAttttt < 1:1512233/76‑1 (MQ=255) aaaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTa < 1:827228/76‑1 (MQ=255) aaTCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTAc < 1:738847/76‑1 (MQ=255) atcatcAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACa < 1:237374/76‑1 (MQ=255) atcatcAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACa < 1:237393/76‑1 (MQ=255) atcatcAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACa < 1:237405/76‑1 (MQ=255) tcatcaATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACAt > 1:928322/1‑76 (MQ=255) tcatcaATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACAt < 1:722714/76‑1 (MQ=255) caATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTtc < 1:329740/76‑1 (MQ=255) cTTACATTATTCCCAATACTAATATTATCACATCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCaa > 1:1636746/1‑76 (MQ=255) | CTATATGAATATAATCGTGTATATCAATACCACCCTCTCCAGCTGAAAACACGCAAAAATCATCAATCCTTACATTATTCCCAATACTAATATTATCACACCCATAAAAAGATGCCTTATCTGATATTTTTACATTTTCTCCAA > REL606/2040077‑2040220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |