| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 71 [0] | [1] 71 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 47 (1.110) | 34/104 | 0.2 | 99.0% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.020) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
ATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2100212‑2100307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > REL606/2122454‑2122527 ATCCGTTTCGCTCAAAAACATAACCCAAAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCC < 1:969003/76‑1 CCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCT > 1:64527/1‑76 CCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCT > 2:1010103/1‑76 CCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCT < 2:1566502/76‑1 CGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACG < 1:1519022/76‑1 CGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACG < 2:741063/76‑1 gaTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGG > 1:1137807/3‑76 GCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGG > 1:1137795/1‑76 GCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGG < 1:1390019/76‑1 GCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGG < 1:1003415/76‑1 CTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGG < 1:866155/76‑1 CTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGG > 1:1464321/1‑76 TGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGC > 2:1578138/1‑76 GAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCT > 1:1928079/1‑76 AAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTA > 1:1197614/1‑76 AAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTA > 2:28827/1‑76 AAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTA > 2:581460/1‑76 AAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTAT < 1:1696686/76‑1 AACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATT < 1:860601/76‑1 ATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTT < 2:137738/76‑1 TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT > 1:1196544/1‑76 CCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTAT < 2:692895/76‑1 CCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTAT > 2:1695298/1‑76 ATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCA > 1:567128/1‑76 AAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATA > 2:4141/1‑76 AAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATA < 2:1479964/76‑1 AAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATA > 2:1388044/1‑76 AATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAG > 2:1111493/1‑76 ATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGC < 2:1173142/76‑1 ATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGC > 1:314677/1‑76 CTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCT > 2:1604388/1‑76 TAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATGAGCCCTA < 2:1692819/76‑1 TAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTA < 2:325978/76‑1 TAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTA < 2:1407459/76‑1 TAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTA < 2:1835413/76‑1 CTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCT < 1:1783689/76‑1 TGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTC > 2:1163142/1‑76 GTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCT > 1:416980/1‑76 GTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCT < 2:1479951/76‑1 TACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTG > 1:1354402/1‑76 ACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGG > 2:1061609/1‑76 CCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGT < 1:544496/76‑1 CAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTA > 1:915470/1‑76 CAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTA < 1:296513/76‑1 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATTTCTGGTca > 1:1053415/1‑74 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA < 2:1658879/76‑1 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA < 1:216510/76‑1 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA < 1:1609947/76‑1 AGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAA < 2:886016/76‑1 AACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAATCG > 1:1626998/1‑76 ACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGT > 1:469231/1‑76 ACCTCCTTAGCCTGTGTAATCTCCCTTAGACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTT > 1:1799357/1‑76 ACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTT < 2:1813786/76‑1 ACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTT < 2:775666/76‑1 ACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTT > 2:884030/1‑76 CCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTC > 2:999301/1‑76 CCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTC > 1:698741/1‑76 CTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCC > 2:1120370/1‑76 GCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACC < 1:40738/76‑1 GCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACC < 1:870439/76‑1 CTGTGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCAC > 2:303283/1‑76 TGTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATC > 1:201445/1‑76 GTAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCG < 1:909252/76‑1 TAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGA > 1:160300/1‑76 TAATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGA > 2:613677/1‑76 AATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAT < 2:1052631/76‑1 AATCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAT < 1:1512559/76‑1 TCTCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAG < 1:1061609/76‑1 TCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAA < 1:1698450/76‑1 TCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAA < 2:972970/76‑1 TTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATATAATCCT < 2:269904/76‑1 TTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCT < 1:1826025/76‑1 TACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTC > 2:1387544/1‑76 CACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCT < 2:1202177/76‑1 CGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTC > 2:1901516/1‑76 CGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTC > 1:528462/1‑76 GGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCA > 1:548169/1‑76 GGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCAT < 1:42150/76‑1 tCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATA < 1:19901/75‑1 CTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAG > 1:582245/1‑76 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA < 1:295638/76‑1 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA < 1:303283/76‑1 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA > 1:1955549/1‑76 TATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCA > 1:1436101/1‑76 TTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAT < 2:766514/76‑1 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > 1:268755/1‑76 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC < 2:657398/76‑1 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > 1:594535/1‑76 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC < 2:887229/76‑1 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > 2:106847/1‑76 TTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC < 2:1070957/76‑1 ATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2100212‑2100307‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > REL606/2122454‑2122527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |