| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 71 [0] | [1] 71 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 47 (1.110) | 34/104 | 0.2 | 99.0% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.020) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 | tAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTT > 1:1196544‑M1/1‑76 (MQ=255) cccATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtat < 2:692895‑M1/76‑4 (MQ=255) cccATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtat > 2:1695298‑M1/1‑73 (MQ=255) aTAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgca > 1:567128‑M1/1‑70 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata < 2:1479964‑M1/76‑9 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata > 2:1388044‑M1/1‑68 (MQ=255) aaaaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcata > 2:4141‑M1/1‑68 (MQ=255) aaTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataag > 2:1111493‑M1/1‑66 (MQ=255) aTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagc > 1:314677‑M1/1‑65 (MQ=255) aTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagc < 2:1173142‑M1/76‑12 (MQ=255) cTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccct > 2:1604388‑M1/1‑62 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcatgagcccta < 2:1692819‑M1/76‑16 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta < 2:1407459‑M1/76‑16 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta < 2:1835413‑M1/76‑16 (MQ=255) tAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagcccta < 2:325978‑M1/76‑16 (MQ=255) cTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatct < 1:1783689‑M1/76‑19 (MQ=255) tGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctc > 2:1163142‑M1/1‑57 (MQ=255) gTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctct < 2:1479951‑M1/76‑21 (MQ=255) gTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctct > 1:416980‑M1/1‑56 (MQ=255) tACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctg > 1:1354402‑M1/1‑55 (MQ=255) aCCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctgg > 2:1061609‑M1/1‑54 (MQ=255) ccAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggt < 1:544496‑M1/76‑24 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggta > 1:915470‑M1/1‑52 (MQ=255) cAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggta < 1:296513‑M1/76‑25 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatttctggtca > 1:1053415‑M1/1‑51 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa < 2:1658879‑M1/76‑26 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa < 1:216510‑M1/76‑26 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa < 1:1609947‑M1/76‑26 (MQ=255) aGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaa < 2:886016‑M1/76‑26 (MQ=255) aaCCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaatcg > 1:1626998‑M1/1‑48 (MQ=255) accaccTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgt > 1:469231‑M1/1‑47 (MQ=255) accTCCTTAGCCTGTGTAATCTCCCTTAGACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctt > 1:1799357‑M1/1‑44 (MQ=255) accTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctt < 2:1813786‑M1/76‑33 (MQ=255) accTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctt < 2:775666‑M1/76‑33 (MQ=255) accTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtctt > 2:884030‑M1/1‑44 (MQ=255) cctcctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttc > 2:999301‑M1/1‑43 (MQ=255) cctcctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttc > 1:698741‑M1/1‑43 (MQ=255) ctcctTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttcc > 2:1120370‑M1/1‑42 (MQ=255) gCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgacc < 1:870439‑M1/76‑42 (MQ=255) gCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgacc < 1:40738‑M1/76‑42 (MQ=255) cTGTGTAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccac > 2:303283‑M1/1‑33 (MQ=255) tgtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatc > 1:201445‑M1/1‑30 (MQ=255) gtAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcg < 1:909252‑M1/76‑48 (MQ=255) tAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcga > 1:160300‑M1/1‑28 (MQ=255) tAATCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcga > 2:613677‑M1/1‑28 (MQ=255) aaTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgat < 2:1052631‑M1/76‑50 (MQ=255) aaTCTCCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgat < 1:1512559‑M1/76‑50 (MQ=255) tctcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatag < 1:1061609‑M1/76‑52 (MQ=255) tcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaa < 2:972970‑M1/76‑54 (MQ=255) tcCCTTACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaa < 1:1698450‑M1/76‑54 (MQ=255) ttACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatataatcct < 2:269904‑M1/76‑58 (MQ=255) ttACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcct < 1:1826025‑M1/76‑58 (MQ=255) tACACGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctc > 2:1387544‑M1/1‑18 (MQ=255) cacGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctcct < 2:1202177‑M1/76‑61 (MQ=255) cGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttc > 2:1901516‑M1/1‑14 (MQ=255) cGGGCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttc > 1:528462‑M1/1‑14 (MQ=255) gggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttca > 1:548169‑M1/1‑13 (MQ=255) ggCTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcat < 1:42150‑M1/76‑65 (MQ=255) tctTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcata < 1:19901‑M1/75‑66 (MQ=255) cTTATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatag > 1:582245‑M1/1‑10 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca > 1:1955549‑M1/1‑8 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca > 1:1436101‑M1/1‑8 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca < 1:295638‑M1/76‑69 (MQ=255) tATTTTTTtatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagca < 1:303283‑M1/76‑69 (MQ=255) tttttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgat < 2:766514‑M1/76‑73 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc < 2:657398‑M1/76‑75 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:268755‑M1/1‑2 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 1:594535‑M1/1‑2 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc < 2:1070957‑M1/76‑75 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc < 2:887229‑M1/76‑75 (MQ=255) tttatgcataagccctatctctggtaaccgtcttccattgaccacatcgatagaatcctccttcatagcacgatgc > 2:106847‑M1/1‑2 (MQ=255) | TAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCC > REL606/2100232‑2100381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |