| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 2,100,308 | Δ22,146 bp | ogrK–[ECB_02013] | 27 genes ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, [ECB_02013] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2100308 | 2122453 | 22146 | 71 [0] | [1] 71 | ogrK–[ECB_02013] | ogrK,yegZ,ECB_01989,ECB_01990,ECB_01991,ECB_01992,ECB_01993,ECB_01994,ECB_01995,ECB_01996,ECB_01997,ECB_01998,ECB_01999,ECB_02000,ECB_02001,ECB_02002,ECB_02003,ECB_02004,ECB_02005,ECB_02006,ECB_02007,ECB_02008,ECB_02009,ECB_02010,ECB_02011,ECB_02012,[ECB_02013] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2100307 | 0 (0.000) | 47 (1.110) | 34/104 | 0.2 | 99.0% | intergenic (+171/+102) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | 2122454 = | 1 (0.020) | coding (172/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
TCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > REL606/2122381‑2122527 | cccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTAt > 2:1695298‑M2/74‑76 (MQ=255)cccataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTAt < 2:692895‑M2/3‑1 (MQ=255) ataaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCa > 1:567128‑M2/71‑76 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa > 2:1388044‑M2/69‑76 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa < 2:1479964‑M2/8‑1 (MQ=255) aaaatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATa > 2:4141‑M2/69‑76 (MQ=255) aatgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAg > 2:1111493‑M2/67‑76 (MQ=255) atgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGc < 2:1173142‑M2/11‑1 (MQ=255) atgctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGc > 1:314677‑M2/66‑76 (MQ=255) ctagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCt > 2:1604388‑M2/63‑76 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATGAGCCCTa < 2:1692819‑M2/15‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:1835413‑M2/15‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:325978‑M2/15‑1 (MQ=255) tagctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTa < 2:1407459‑M2/15‑1 (MQ=255) ctgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtct < 1:1783689‑M2/18‑1 (MQ=255) tgtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTAtctc > 2:1163142‑M2/58‑76 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct < 2:1479951‑M2/20‑1 (MQ=255) gtaccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATctct > 1:416980‑M2/57‑76 (MQ=255) taccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTg > 1:1354402‑M2/56‑76 (MQ=255) accaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTgg > 2:1061609‑M2/55‑76 (MQ=255) ccaggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGt < 1:544496‑M2/23‑1 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa > 1:915470‑M2/53‑76 (MQ=255) caggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTa < 1:296513‑M2/24‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATTTCTggtca > 1:1053415‑M2/52‑74 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa < 1:1609947‑M2/25‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa < 2:1658879‑M2/25‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa < 2:886016‑M2/25‑1 (MQ=255) aggaaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTaa < 1:216510‑M2/25‑1 (MQ=255) aaccacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAATCg > 1:1626998‑M2/49‑76 (MQ=255) accacctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGt > 1:469231‑M2/48‑76 (MQ=255) acctccttagcctgtgtaatctcccttagacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt > 1:1799357‑M2/45‑76 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt > 2:884030‑M2/45‑76 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 2:775666‑M2/32‑1 (MQ=255) acctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCtt < 2:1813786‑M2/32‑1 (MQ=255) cctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTc > 1:698741‑M2/44‑76 (MQ=255) cctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTc > 2:999301‑M2/44‑76 (MQ=255) ctccttagcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTcc > 2:1120370‑M2/43‑76 (MQ=255) gcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAcc < 1:870439‑M2/41‑1 (MQ=255) gcctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGAcc < 1:40738‑M2/41‑1 (MQ=255) ctgtgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACcac > 2:303283‑M2/34‑76 (MQ=255) tgtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATc > 1:201445‑M2/31‑76 (MQ=255) gtaatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCg < 1:909252‑M2/47‑1 (MQ=255) taatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGa > 2:613677‑M2/29‑76 (MQ=255) taatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGa > 1:160300‑M2/29‑76 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 2:1052631‑M2/49‑1 (MQ=255) aatctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 1:1512559‑M2/49‑1 (MQ=255) aaTATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGAt < 2:1738095/76‑1 (MQ=255) tctcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAg < 1:1061609‑M2/51‑1 (MQ=255) tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGaa < 2:972970‑M2/53‑1 (MQ=255) tcccttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGaa < 1:1698450‑M2/53‑1 (MQ=255) ttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATATAAtcct < 2:269904‑M2/57‑1 (MQ=255) ttacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcct < 1:1826025‑M2/57‑1 (MQ=255) tacacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAAtcctc > 2:1387544‑M2/19‑76 (MQ=255) cacgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATcctcct < 2:1202177‑M2/60‑1 (MQ=255) cgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTc > 2:1901516‑M2/15‑76 (MQ=255) cgggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTc > 1:528462‑M2/15‑76 (MQ=255) gggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCa > 1:548169‑M2/14‑76 (MQ=255) ggcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCAt < 1:42150‑M2/64‑1 (MQ=255) tcttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATa < 1:19901‑M2/65‑1 (MQ=255) cttattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAg > 1:582245‑M2/11‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 1:303283‑M2/68‑1 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa < 1:295638‑M2/68‑1 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa > 1:1955549‑M2/9‑76 (MQ=255) tattttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCa > 1:1436101‑M2/9‑76 (MQ=255) ttttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGAt < 2:766514‑M2/72‑1 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc < 2:1070957‑M2/74‑1 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 2:106847‑M2/3‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc < 2:887229‑M2/74‑1 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:594535‑M2/3‑76 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc < 2:657398‑M2/74‑1 (MQ=255) ttTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGc > 1:268755‑M2/3‑76 (MQ=255) | TCAAACCCGCATTGTACCGTTGAAAGCCCCTACTGGTGACACCCTAAATATCCCTTACACGGGCTTATTTTTTTATGCATAAGCCCTATCTCTGGTAACCGTCTTCCATTGACCACATCGATAGAATCCTCCTTCATAGCACGATGC > REL606/2122381‑2122527 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |