New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3201814 =	66 (1.120)	21 (0.380)	11/142	3.9	18.6%	coding (366/1104 nt)	yhaC	hypothetical protein
	?	REL606	3202251 =	121 (2.180)					coding (803/1104 nt)	yhaC	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCAGTCCCACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3201892‑3201814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAAT  >  REL606/3202251‑3202325                                                                                                                                                            TCCAGTCCCACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTG                                                                                <  2:1329696/76‑1   CAGTCCCACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGAT                                                                              <  1:900676/76‑1          ACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAG                                                                       <  2:1302756/76‑1          ACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAG                                                                       <  2:1302748/76‑1                   AATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAAT                                                              <  2:1471308/76‑1                          TTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAA                                                       <  2:978919/76‑1                               CCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAA                                                  <  2:709946/76‑1                                 TCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATA                                                <  2:1672279/76‑1                                 TCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATA                                                <  2:1672299/76‑1                                   CTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATA                                              <  2:1162527/76‑1                                   CTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATA                                              <  2:1162534/76‑1                                    TGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATAT                                             <  2:574360/76‑1                                    TGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATAT                                             <  2:574372/76‑1                                    TGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATAT                                             <  2:574371/76‑1                                       TTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAA                                          <  2:1312355/76‑1                                       TTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAA                                          <  2:1312376/76‑1                                        TTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAA                                         <  2:72063/76‑1                                        TTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAA                                         <  2:72042/76‑1                                        TTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAA                                         <  2:48746/76‑1                                        TTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATAAAAAA                                         <  2:605065/76‑1                                         TCATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAATTAACAAAAGAAATATAAAAAAG                                        <  2:1041066/76‑1                                          CATTGTATATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAA‑AAAAAAAAGAAATATATAAAAGCT                                      <  2:431559/76‑1                                          CATTGTAAATATCTTTTAATGGGCAATTAATATTGATAAATTAGAAAATGAA‑AAAAAAAAGAAATATATAAAAGCT                                      <  2:431537/76‑1                                                                            GATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTA     >  2:1756285/1‑76                                                                            GATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTA     >  1:1736179/1‑76                                                                            GATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTA     >  1:181493/1‑76                                                                            GATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTA     >  1:181508/1‑76                                                                             ATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAA    <  1:621361/76‑1                                                                              TAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAA   >  2:363710/1‑76                                                                               AAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAAT  <  1:295443/76‑1                                                                               AAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAAT  <  1:114294/76‑1                                                                                                                                                            TCCAGTCCCACAACTAAAAATTACGTTTAACCTCCTGATTTCATTGTAAATATCTTTTAATGGGCAATTAATATTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3201892‑3201814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAAT  >  REL606/3202251‑3202325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.