New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 3201814 =66 (1.120)21 (0.380) 11/142 3.9 18.6% coding (366/1104 nt) yhaC hypothetical protein
?REL606 3202251 = 121 (2.180)coding (803/1104 nt) yhaC hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

ACATTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAATT  >  REL606/3202176‑3202326
                                                                           |                                                                           
aCATTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATaa                                                                             <  1:281712/76‑1 (MQ=255)
aCATTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATaa                                                                             <  1:1114829/76‑1 (MQ=255)
 cATTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATaaa                                                                            <  1:1696295/76‑1 (MQ=255)
  ataaCCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAAt                                                                           <  1:1469195/73‑1 (MQ=255)
  aTTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAAt                                                                           <  2:899828/76‑1 (MQ=255)
  aTTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAAt                                                                           <  2:537550/76‑1 (MQ=255)
   ttACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAAtt                                                                          >  1:1365988/1‑76 (MQ=255)
    tACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTa                                                                         >  2:1153234/1‑76 (MQ=255)
     aCCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAAtt                                                                          <  1:1560303/74‑1 (MQ=255)
     aCCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAg                                                                        <  1:1302756/76‑1 (MQ=255)
     aCCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAg                                                                        <  1:166632/76‑1 (MQ=255)
     aCCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAg                                                                        <  1:1302748/76‑1 (MQ=255)
       cGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGaa                                                                      >  1:1474604/1‑76 (MQ=255)
       cGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGaa                                                                      >  2:1283443/1‑76 (MQ=255)
        gaagaaCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGaaa                                                                     <  2:1583664/76‑1 (MQ=255)
         aagaaCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGaaaa                                                                    >  2:1820505/1‑76 (MQ=255)
         aagaaCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGaaaa                                                                    >  2:375528/1‑76 (MQ=255)
          agaaCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAAt                                                                   >  2:1142797/1‑76 (MQ=255)
            aaCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGa                                                                 >  2:1111555/1‑76 (MQ=255)
             aCAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGaa                                                                >  1:1303629/1‑76 (MQ=255)
              cAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAAt                                                               <  1:158695/76‑1 (MQ=255)
              cAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAAt                                                               <  1:1471308/76‑1 (MQ=255)
               naTTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAAtt                                                              >  1:1690802/2‑76 (MQ=255)
                aTTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTa                                                             <  1:790032/76‑1 (MQ=255)
                aTTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTa                                                             <  1:790015/76‑1 (MQ=255)
                 ttAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTaa                                                            >  1:542200/1‑76 (MQ=255)
                 ttAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTaa                                                            <  1:1280657/76‑1 (MQ=255)
                     aaaTTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACaaa                                                        <  1:1390652/76‑1 (MQ=255)
                     aaaTTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACaaa                                                        <  1:978919/76‑1 (MQ=255)
                       aTTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAg                                                      <  2:1173485/76‑1 (MQ=255)
                       aTTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAg                                                      <  1:1782888/76‑1 (MQ=255)
                         tATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGaa                                                    <  1:201709/76‑1 (MQ=255)
                          aTGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGaaa                                                   <  1:1329170/76‑1 (MQ=255)
                           tGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAat                                                  >  2:526313/1‑76 (MQ=255)
                            gagaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAata                                                 <  1:664231/76‑1 (MQ=255)
                            gagaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAata                                                 <  1:1672300/76‑1 (MQ=255)
                            gagaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAata                                                 <  1:664238/76‑1 (MQ=255)
                            gagaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAata                                                 <  1:925089/76‑1 (MQ=255)
                             agaTTTGCAATTATAAAATCTATACTAAGAGCAACTCTTACAGATACATTAGAAAATGAATTAACAAAAGAAatat                                                >  2:446220/1‑76 (MQ=255)
                             agaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatat                                                <  2:1625064/76‑1 (MQ=255)
                             agaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatat                                                <  2:1400758/76‑1 (MQ=255)
                              gaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatata                                               <  1:1162534/76‑1 (MQ=255)
                              gaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatata                                               <  1:1162527/76‑1 (MQ=255)
                              gaTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatata                                               <  1:724312/76‑1 (MQ=255)
                               aTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatatat                                              <  1:574371/76‑1 (MQ=255)
                               aTTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAatatat                                              <  1:574360/76‑1 (MQ=255)
                                tttGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAAtatata                                             <  1:1249957/76‑1 (MQ=255)
                                tttGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAAtatata                                             <  1:1249968/76‑1 (MQ=255)
                                  tGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaa                                           <  1:1126099/76‑1 (MQ=255)
                                  tGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaa                                           <  1:218837/76‑1 (MQ=255)
                                  tGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaa                                           <  1:1538823/76‑1 (MQ=255)
                                  tGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaa                                           <  1:1312355/76‑1 (MQ=255)
                                  tGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaa                                           <  1:1312376/76‑1 (MQ=255)
                                   gCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaaa                                          <  1:72063/76‑1 (MQ=255)
                                   gCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaaa                                          <  1:72042/76‑1 (MQ=255)
                                   gCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaaa                                          <  1:48746/76‑1 (MQ=255)
                                   gCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaaa                                          <  1:605065/76‑1 (MQ=255)
                                    cAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAg                                         >  1:1462078/1‑76 (MQ=255)
                                    cAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAg                                         <  1:416406/76‑1 (MQ=255)
                                    cAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAg                                         <  1:1376733/76‑1 (MQ=255)
                                    cAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAg                                         <  1:1376716/76‑1 (MQ=255)
                                    cAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAg                                         <  1:1041066/76‑1 (MQ=255)
                                     aaTTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATaaaacc                                        <  1:110182/76‑3 (MQ=255)
                                     aaTTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGc                                        <  1:110193/76‑1 (MQ=255)
                                     aaTTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGc                                        <  1:1531464/76‑1 (MQ=255)
                                      aTTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCt                                       <  1:431559/76‑1 (MQ=255)
                                      aTTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCt                                       <  1:431537/76‑1 (MQ=255)
                                        tataAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCa                                     >  2:798013/1‑76 (MQ=255)
                                            aaaTCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGa                                 <  1:1098493/76‑1 (MQ=255)
                                                    aCCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATcaac                         <  1:1257445/76‑1 (MQ=255)
                                                    aCCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATcaac                         >  1:1613954/1‑76 (MQ=255)
                                                      cAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATcaacaa                       >  2:86446/1‑76 (MQ=255)
                                                       aaGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAAt                      >  2:724307/1‑76 (MQ=255)
                                                       aaGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAAt                      >  1:21499/1‑76 (MQ=255)
                                                        agagCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCACCAAtt                     >  1:920123/1‑76 (MQ=255)
                                                        agagCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAAtt                     >  1:1659636/1‑76 (MQ=255)
                                                            cAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCtt                 >  2:1734332/1‑76 (MQ=255)
                                                             aaCTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTg                <  1:633358/76‑1 (MQ=255)
                                                             aaCTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTg                <  2:649481/76‑1 (MQ=255)
                                                              aCTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGa               >  2:753424/1‑76 (MQ=255)
                                                               ctctTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGaa              <  1:1467415/76‑1 (MQ=255)
                                                                tctTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAAc             >  1:422815/1‑76 (MQ=255)
                                                                 ctTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCGTCGAAAATCAACAATTGCTTGAACa            >  1:1105695/1‑76 (MQ=255)
                                                                 ctTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACa            >  1:1105674/1‑76 (MQ=255)
                                                                 ctTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACa            <  1:1218165/76‑1 (MQ=255)
                                                                  ttACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAg           <  2:1514736/76‑1 (MQ=255)
                                                                   tACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGa          >  2:1403641/1‑76 (MQ=255)
                                                                   tACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGa          <  1:639563/76‑1 (MQ=255)
                                                                   tACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGa          >  1:1128793/1‑76 (MQ=255)
                                                                    aCAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaa         <  2:1653724/76‑1 (MQ=255)
                                                                       gATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaatta      >  1:1736179/1‑76 (MQ=255)
                                                                       gATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaatta      >  2:1756285/1‑76 (MQ=255)
                                                                       gATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaatta      >  1:181508/1‑76 (MQ=255)
                                                                       gATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaatta      >  1:181493/1‑76 (MQ=255)
                                                                        aTAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaa     <  1:621361/76‑1 (MQ=255)
                                                                         tAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaaa    >  2:363710/1‑76 (MQ=255)
                                                                          aaaTTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaaat   <  1:114294/76‑1 (MQ=255)
                                                                          aaaTTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaaat   <  1:295443/76‑1 (MQ=255)
                                                                           aaTTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaaatt  >  2:37639/1‑76 (MQ=255)
                                                                           aaTTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGaattaaatt  <  2:180053/76‑1 (MQ=255)
                                                                           |                                                                           
ACATTACCGAAGAACAATTAAAAATTATGAGATTTGCAATTATAAAATCTATACCAAGAGCAACTCTTACAGATAAATTAGAAAATGAATTAACAAAAGAAATATATAAAAGCTCATCGAAAATCAACAATTGCTTGAACAGAATTAAATT  >  REL606/3202176‑3202326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.