| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 1,941,961 | IS186 (–) +8 bp :: Δ2 bp | coding (1853‑1860/2079 nt) | flhA ← | flagellar biosynthesis protein A |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1857066 = | NA (NA) | 56 (0.950) | 46/150 | 0.2 | 100% | noncoding (3/1343 nt) | IS186 | repeat region |
| ? | REL606 | 1941961 = | 0 (0.000) | coding (1860/2079 nt) | flhA | flagellar biosynthesis protein A | |||||
| * | ? | REL606 | = 1941968 | 0 (0.000) | 60 (1.070) | 45/144 | 0.2 | 100% | coding (1853/2079 nt) | flhA | flagellar biosynthesis protein A |
| ? | REL606 | = 2774196 | NA (NA) | noncoding (1343/1343 nt) | IS186 | repeat region | |||||
CGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1857136‑1857066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGACTTC > REL606/1941961‑1942035 CGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTACGCAGTC < 2:1645175/76‑1 GTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCC < 2:1595675/76‑1 TGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCT > 2:1610211/1‑76 GAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTC < 1:1601721/76‑1 AGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCC > 1:72644/1‑76 GTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCC < 1:843309/76‑1 GTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCC < 1:499456/76‑1 TAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCG < 2:1864520/76‑1 AATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGC > 2:1041557/1‑76 AATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGC > 2:1041552/1‑76 AATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGC > 1:332825/1‑76 ATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCC < 1:1365732/76‑1 TCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCT < 2:1517618/76‑1 TCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCA < 1:549622/76‑1 CGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCGGTCCTCCCCCGCCCTGCAG < 2:843145/76‑1 CGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAG < 1:541057/76‑1 GGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGC < 1:463055/76‑1 CACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGC > 2:1501960/1‑76 CACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGC > 1:390370/1‑76 ACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCC > 1:671108/1‑76 GTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTG > 2:1496120/1‑76 GTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTG > 1:77092/1‑76 TTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGT < 1:1141090/76‑1 TTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGT > 2:847459/1‑76 ATCATATCAGGCGTAGTACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTA > 2:252922/1‑76 TCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAA < 2:1577743/76‑1 TCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAA > 1:1720364/1‑76 CATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAAC > 1:756841/1‑76 TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAA > 2:1848798/1‑76 TATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAA < 1:1661767/76‑1 CAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACG > 2:878631/1‑76 GTAATACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCA < 2:1016968/76‑1 TACCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGG < 1:59382/76‑1 CCACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTG > 2:911251/1‑76 CACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGT > 2:1085831/1‑76 CACAACCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGGGT > 2:1801659/1‑76 CCCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGA > 2:850317/1‑76 CCTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAG < 1:918188/76‑1 CTTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGGATCGAGG > 2:755321/1‑76 TTAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGC > 1:172846/1‑76 TAAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCC < 1:632569/76‑1 AAGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCA > 1:62545/1‑76 AGTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAA > 2:994722/1‑76 GTTAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAAT < 1:1504390/76‑1 gTAGCGCTTATGCCGTCCGCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATA < 2:1604469/75‑1 TAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAA > 1:1636962/1‑76 TAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAA < 2:679658/76‑1 TAGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAA > 1:1798327/1‑76 AGCGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAAC > 1:1396602/1‑76 CGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTCTCGAGGCCAATAACAT > 1:1573435/1‑76 CGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACAT < 1:1076046/76‑1 CGCTTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACAT > 1:695672/1‑76 TTATGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGA > 2:122197/1‑76 TGCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGACTT > 1:1819299/1‑76 GCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGACTTC > 2:1767192/1‑76 GCAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGACTTC > 1:801384/1‑76 CGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1857136‑1857066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGTCCTCCCCCGCCCTGCAGCGCCTGTAGTAACAAACGTTCCAGCGGTGTATCGAGGCCAATAACATGGACTTC > REL606/1941961‑1942035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |