| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 1,941,961 | IS186 (–) +8 bp :: Δ2 bp | coding (1853‑1860/2079 nt) | flhA ← | flagellar biosynthesis protein A |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1857066 = | NA (NA) | 56 (0.950) | 46/150 | 0.2 | 100% | noncoding (3/1343 nt) | IS186 | repeat region |
| ? | REL606 | 1941961 = | 0 (0.000) | coding (1860/2079 nt) | flhA | flagellar biosynthesis protein A | |||||
| * | ? | REL606 | = 1941968 | 0 (0.000) | 60 (1.070) | 45/144 | 0.2 | 100% | coding (1853/2079 nt) | flhA | flagellar biosynthesis protein A |
| ? | REL606 | = 2774196 | NA (NA) | noncoding (1343/1343 nt) | IS186 | repeat region | |||||
GCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1941897‑1941968‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT < REL606/2774196‑2774119 GCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCA > 2:1577316/1‑76 CATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCAT < 2:1332854/76‑1 CATCTCCAGACGGGATAGCGCTCCCTGAGTTTGCGCCAGTAAGCGACCCGCCAGCCCTGGCTCCAGTCCTCCCCAT < 1:874117/76‑1 TCTCCTGAGGGGATAGCGCTGCCTGAGTTTGCGCCTGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAA < 2:139213/76‑1 TCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGC < 1:1365124/76‑1 CCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCG > 1:1296986/1‑76 TGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCT < 1:733942/76‑1 GACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTA < 1:343222/76‑1 GGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACT < 2:1866568/76‑1 GATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTA < 1:168896/76‑1 ATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAA < 1:350678/76‑1 ATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAA > 1:1485143/1‑76 AGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGG < 1:225378/76‑1 CGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGT < 1:1096479/76‑1 TTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGA < 1:1417863/76‑1 TCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAA > 2:424409/1‑76 CCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAAC < 1:75904/76‑1 CTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACC > 1:1449337/1‑76 CTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACC < 1:1160436/76‑1 TGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCA < 2:1637305/76‑1 GTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCT < 2:1662360/76‑1 TTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTG < 2:9267/76‑1 CGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA > 2:594142/1‑76 CGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA > 1:1686373/1‑76 AGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC > 1:518625/1‑76 GTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG < 1:77256/76‑1 AACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG > 1:1747048/1‑76 ACGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGC < 2:826902/76‑1 CGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCC > 2:1130711/1‑76 CGATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCC > 2:14894/1‑76 GATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCT < 1:1393251/76‑1 GATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCT > 2:378331/1‑76 ATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC > 2:1290260/1‑76 ATCCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC > 1:850299/1‑76 CCGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG > 1:1638828/1‑76 CGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT < 1:411891/76‑1 CGCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT < 1:411909/76‑1 GCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:1878107/1‑76 GCCAGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:1195136/1‑76 AGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT < 1:1663323/76‑1 AGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT > 1:1379680/1‑76 AGCCCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT < 2:578351/76‑1 CCTGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGT < 2:1224578/76‑1 TGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTA > 1:824100/1‑76 TGGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTA > 1:870334/1‑76 GGCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA < 2:1253332/76‑1 GCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAG < 2:1699908/76‑1 GCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAG < 1:854089/76‑1 GCTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAG < 2:1159230/76‑1 CTCCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGA < 2:1016465/76‑1 CCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG < 1:222012/76‑1 CCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 1:20549/1‑76 CCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 2:363989/1‑76 CCAGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG > 2:1354836/1‑76 AGTCCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT < 2:1407282/76‑1 CCTCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:1056769/76‑1 ggCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTC < 2:165321/74‑1 ggCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTC < 1:1310122/74‑1 TCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTC < 2:586732/76‑1 TCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTC < 2:561501/76‑1 TCCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTC < 2:1873035/76‑1 CCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCG < 1:770394/76‑1 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC > 1:1804172/1‑76 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC < 1:1509927/76‑1 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC > 1:222151/1‑76 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC > 1:1686311/1‑76 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC < 1:1319734/76‑1 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC > 1:83639/1‑76 CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC > 1:15709/1‑76 tCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCG > 2:1677205/2‑76 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCG < 1:1073427/76‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCG < 1:1840632/76‑1 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT > 1:1640679/1‑76 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT > 1:50655/1‑76 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT < 1:343887/76‑1 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT > 2:474930/1‑76 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT < 2:1562675/76‑1 GCATCTCCTGACGGGATAGCGCTTCCTGAGTTTGCGCCAGTAAACGATCCGCCAGCCCTGGCTCCAGTCCTCccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1941897‑1941968‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGT < REL606/2774196‑2774119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |