| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3739626 | 80 (1.290) | 11 (0.190) | 6/140 | 6.0 | 13.1% | coding (340/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase |
| ? | REL606 | = 3739937 | 71 (1.230) | coding (29/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCAATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3739547‑3739626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tactgAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGACCGTAACTTTT < REL606/3739937‑3739863 AGCAATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGAT < 2:128508/76‑1 AATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACT > 1:380143/1‑76 AATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACT > 1:46546/1‑76 AATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACT > 2:1196768/1‑76 ATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTG > 1:1190142/1‑76 ATATATAACAGATTTTCAATAGTTTCACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGT > 2:1872460/1‑76 ATAACAGATTTTCAATAGTTTCACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGT > 2:400576/1‑76 ATAACAGATTTTCAATAGTTTCACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGT > 2:247723/1‑76 AGTTTCACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGG > 2:1663818/1‑76 TCACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATT > 2:1520617/1‑76 ACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGA > 2:605901/1‑76 ACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGA > 2:1421372/1‑76 ACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGA > 2:1383975/1‑76 ACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGA > 2:1383972/1‑76 ACTCAGATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGA > 2:1383966/1‑76 ATACTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGACCGTAA > 2:1016755/1‑76 cgtTGAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGACCGTAAC > 2:1108679/4‑76 GAAATCGCTGTCTCTGGGGAAATTGCTAACAACGATCGTGTGTTAAATATCGCTTACGGTATTCACCGTAACTTTT > 2:1617464/1‑76 AGCAATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3739547‑3739626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tactgAAATCGCTGTCTCTGGGGAAATTGCTAACACCGATCGTGTGTTAAATATCGCTTACGGTATTGACCGTAACTTTT < REL606/3739937‑3739863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |