| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3739626 | 80 (1.290) | 11 (0.190) | 6/140 | 6.0 | 13.1% | coding (340/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase |
| ? | REL606 | = 3739937 | 71 (1.230) | coding (29/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTGG > REL606/3739551‑3739700 | aTCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTg > 1:1190142/1‑76 (MQ=255) ccAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGa > 1:1160981/1‑76 (MQ=255) cAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGaa > 2:1469185/1‑76 (MQ=255) aGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAAc < 2:893743/76‑1 (MQ=255) gCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACg < 1:1706155/76‑1 (MQ=255) cTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGc > 1:1809936/1‑76 (MQ=255) cTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGc > 1:1376782/1‑76 (MQ=255) cTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGc > 1:1171184/1‑76 (MQ=255) cTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGc > 2:1803225/1‑76 (MQ=255) tAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCa > 1:1877068/1‑76 (MQ=255) tAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCa > 1:846383/1‑76 (MQ=255) tAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCa > 1:1428349/1‑76 (MQ=255) aaTGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCaa > 1:983008/1‑76 (MQ=255) aaTGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCaa < 2:294200/76‑1 (MQ=255) aGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTaa > 2:1645659/1‑76 (MQ=255) gCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTaaa < 2:187177/76‑1 (MQ=255) cTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACg > 1:1725279/1‑76 (MQ=255) tACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGgaa > 1:1840729/1‑76 (MQ=255) cAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGgaaga > 1:255771/1‑76 (MQ=255) aGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGgaagaa > 1:647800/1‑76 (MQ=255) gATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAAt < 1:717249/76‑1 (MQ=255) tGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGt < 1:675410/76‑1 (MQ=255) gACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGtt < 2:1160981/76‑1 (MQ=255) aGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATaa < 1:1648176/76‑1 (MQ=255) cATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGa > 2:634181/1‑76 (MQ=255) tCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGAcc > 2:286419/1‑76 (MQ=255) atatatAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACt > 1:1258073/1‑76 (MQ=255) atatatAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACt > 1:1872460/1‑76 (MQ=255) atatatAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACt > 2:539374/1‑76 (MQ=255) tatataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTg > 1:1694677/1‑76 (MQ=255) atataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGt < 2:1354497/76‑1 (MQ=255) atataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGt < 2:692920/76‑1 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt > 1:400576/1‑76 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt < 1:843960/76‑1 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt > 1:1452059/1‑76 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt > 2:564040/1‑76 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt > 1:1353683/1‑76 (MQ=255) ataACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGttt > 1:247723/1‑76 (MQ=255) aaCAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCa < 1:1637059/76‑1 (MQ=255) cAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAgg < 2:1787615/76‑1 (MQ=255) ttttCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTgg > 1:315178/1‑76 (MQ=255) ttCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTgggg > 1:1945642/1‑76 (MQ=255) ttCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTgggg > 1:1217957/1‑76 (MQ=255) ttCAAGAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTgggg < 2:1948817/76‑1 (MQ=255) tCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGa < 2:383289/76‑1 (MQ=255) tCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGa > 1:1761724/1‑76 (MQ=255) cAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGaa < 2:260336/76‑1 (MQ=255) aaTAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAg < 1:963689/76‑1 (MQ=255) aGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGata > 1:1663818/1‑76 (MQ=255) aGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGata > 2:1410080/1‑76 (MQ=255) gTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGatat < 1:160082/76‑1 (MQ=255) ttCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCa > 1:1762302/1‑76 (MQ=255) tCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCaa > 1:1553245/1‑76 (MQ=255) tCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCaa > 1:686067/1‑76 (MQ=255) ncACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCaa > 1:1520617/2‑76 (MQ=255) cACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAAt < 1:918196/76‑1 (MQ=255) cACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAAt < 1:1670552/76‑1 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:1383972/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 2:834854/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:1383975/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:1383966/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa < 2:1693373/76‑1 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:1421372/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 2:424103/1‑76 (MQ=255) aCTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATa > 1:605901/1‑76 (MQ=255) cTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATaa < 1:562596/76‑1 (MQ=255) tCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATaaa < 2:180429/76‑1 (MQ=255) tCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATaaa > 1:770255/1‑76 (MQ=255) cAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATagag > 1:58180/1‑76 (MQ=255) cAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAg > 2:1761565/1‑76 (MQ=255) aGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAAAAAAgg < 2:1256239/76‑1 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 2:156515/1‑76 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 2:1212411/1‑76 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 2:1046451/1‑76 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 1:1936604/1‑76 (MQ=255) aTACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCa > 1:1016755/1‑76 (MQ=255) aCTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCAtt > 1:1386489/1‑76 (MQ=255) cTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTg > 2:1527932/1‑76 (MQ=255) cTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTg < 1:1432885/76‑1 (MQ=255) tGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTgg > 2:373288/1‑76 (MQ=255) tGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTgg < 1:166775/76‑1 (MQ=255) | ATCCAGCTAATGAGCCTTTACAGATGACATCAGCATCGATATATAACAGATTTTCAATAGTTTCACTCAGATACTGGAACGCAACTAAACGGAAGAATGTTGCATAAGACCACTGTTTCAGGCTGGGGAAGATATCAATAAAGGCATTGG > REL606/3739551‑3739700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |