New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 2039283 = | 29 (0.530) | 10 (0.190) | 7/142 | 5.2 | 23.1% | coding (412/747 nt) | wbbA | putative glycosyltransferase WbbA |
? | REL606 | 2039547 = | 39 (0.760) | coding (148/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
Rejected: Coverage evenness skew score above cutoff. |
TTCATATCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTT > REL606/2039474‑2039615 | ttCATATCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAg < 1:969232/76‑1 (MQ=255) tCATATCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGt < 1:104299/76‑1 (MQ=255) atCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAAt > 1:469318/1‑76 (MQ=255) atCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAAt > 1:469301/1‑76 (MQ=255) tCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATg < 1:1267132/76‑1 (MQ=255) cGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGc < 1:1464840/76‑1 (MQ=255) atatTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTa < 1:1628628/76‑1 (MQ=255) tCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGt < 1:1433845/76‑1 (MQ=255) aaaGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCt < 1:1092886/76‑1 (MQ=255) aGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCttt > 2:1600758/1‑76 (MQ=255) gtgtAGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTta > 1:875184/1‑76 (MQ=255) gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata < 1:692992/76‑1 (MQ=255) gtTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTtata < 1:783653/76‑1 (MQ=255) ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat < 2:882840/76‑1 (MQ=255) ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat < 1:1239409/76‑1 (MQ=255) ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat < 1:576575/76‑1 (MQ=255) ttGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTatat < 1:808283/76‑1 (MQ=255) tGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAtt < 1:1189280/76‑1 (MQ=255) tGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATAtt < 1:620276/76‑1 (MQ=255) ataACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGa < 1:1730677/76‑1 (MQ=255) aCGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTc > 2:1035432/1‑76 (MQ=255) aGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGt < 1:1355971/76‑1 (MQ=255) gCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTta < 2:1295291/76‑1 (MQ=255) cAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtat < 2:1642593/76‑1 (MQ=255) aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata > 1:1472953/1‑76 (MQ=255) aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:1199815/76‑1 (MQ=255) aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:497096/76‑1 (MQ=255) aaCGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:497079/76‑1 (MQ=255) aaCGTTTAATGAGCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:877811/76‑1 (MQ=255) aaCGTTTAATGAACCAACAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTtata < 1:877829/76‑1 (MQ=255) tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt > 2:1655992/1‑76 (MQ=255) tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt > 2:1655993/1‑76 (MQ=255) tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt < 1:619240/76‑1 (MQ=255) tttAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAt < 1:619238/76‑1 (MQ=255) tAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGAttt < 2:997639/76‑1 (MQ=255) aaTGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTta < 1:1624640/76‑1 (MQ=255) aTCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATaaa > 1:832272/1‑76 (MQ=255) tCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAAt < 1:915278/76‑1 (MQ=255) aaaaTAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAAtttt > 2:503429/1‑76 (MQ=255) | TTCATATCGATATTTTCAAAGTGTTGATATAACGGATCTAAGGAAGCAACGTTTAATGATCCATCAAAAATAAAAGTAAATGCTATTTGGTCTTTATATTTAGATTCTTTTATTGTATTTATAAGATTTATAAAACAATTTT > REL606/2039474‑2039615 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |