New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	4217526 =	49 (0.880)	52 (1.030)	40/136	0.2	51.6%	coding (961/2097 nt)	yjbH	predicted porin
	?	REL606	= 4440926	53 (1.050)					coding (190/552 nt)	yjgA	hypothetical protein

ACGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/4217606‑4217526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatctgCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTAAGATG  <  REL606/4440926‑4440852                                                                                                                                                              ACGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGG                                                                                  >  2:386704/1‑76  CGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGA                                                                                 <  2:1796976/76‑1  CGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGA                                                                                 >  2:1545242/1‑76  CGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGA                                                                                 >  2:1206762/1‑76      TGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTG                                                                             >  1:1449680/1‑76      TGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTG                                                                             <  1:149103/76‑1       GATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGC                                                                            >  1:614049/1‑76       GATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGC                                                                            >  1:357942/1‑76          CCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCG                                                                         >  1:129879/1‑76             TTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGG                                                                      <  2:962933/76‑1             TTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGG                                                                      >  2:1183760/1‑76             TTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGG                                                                      >  1:1729657/1‑76                   CGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTG                                                                <  2:1365043/76‑1                     AATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAG                                                              >  2:338331/1‑76                          CGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGC                                                         >  1:1008501/1‑76                           GATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCC                                                        >  1:137601/1‑76                            ctcTTTCGCCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:1134178/73‑1                            aaATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:1337779/74‑1                            ATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:296665/76‑1                            ATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:282828/76‑1                            ATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:1646718/76‑1                            ATATTCCTCCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCC                                                       <  2:383390/76‑1                               TTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCCGC                                                    >  1:1085039/1‑76                                 TCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGT                                                  >  1:379642/1‑76                                 TCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGT                                                  <  1:902324/76‑1                                     CTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTA                                              <  2:1421057/76‑1                                     CTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTA                                              >  2:1172961/1‑76                                      TGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAA                                             <  1:15312/76‑1                                         TCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGAT                                          <  2:1481523/76‑1                                          CGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATG                                         >  1:58967/1‑76                                          CGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATG                                         <  1:156349/76‑1                                          CGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCGCGCCCAGCGTATTAAGATG                                         >  2:1551346/1‑76                                            CCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGA                                       <  1:1509692/76‑1                                            CCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGA                                       <  1:1299301/76‑1                                              GGTAACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAG                                     >  2:1400765/1‑76                                                 AACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGcc                                  >  2:1437592/1‑74                                                 AACATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTC                                  <  1:134422/76‑1                                                   CATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGC                                <  2:1632825/76‑1                                                    ATACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCC                               <  1:955523/76‑1                                                     TACAGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCG                              >  2:832562/1‑76                                                        AGCGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCG                           >  2:895941/1‑76                                                          CGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCC                         <  2:909387/76‑1                                                          CGTATCGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCC                         <  2:1695196/76‑1                                                           aTATGGCCTTTCGCCTGCAGCTGCGCGCGGCTATTGAGCTAGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCA                        <  2:1444187/75‑1                                                            TATCGCTTTTCCCCTGTATCTGCGCCCGCCGATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAG                       <  2:1109361/76‑1                                                            TATCGCCTTTCGCCTGGATCTGCGCGCGACTATTGAGCTCGCCCAGCGCATTAAGATGGAAGGCCGCCGCCGCCAG                       >  1:1542823/1‑76                                                               CGCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTG                    <  1:1105788/76‑1                                                                GCCTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGC                   <  2:1609068/76‑1                                                                 CCTTTCCCCTGGGTCTGGGCGGGGTTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCA                  <  1:399696/76‑1                                                                  CTTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAG                 >  2:478259/1‑76                                                                   TTTCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGC                >  2:311170/1‑76                                                                    tcCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCT               <  1:1067067/74‑1                                                                     tctCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTC              >  1:11406/4‑76                                                                     TCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTC              >  1:1256387/1‑76                                                                     TCGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTC              <  1:1672481/76‑1                                                                      CGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCA             >  2:1650982/1‑76                                                                      CGCCTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCA             >  2:807848/1‑76                                                                         CTGGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCG          >  2:1682917/1‑76                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        >  2:398775/1‑76                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        >  2:1642025/1‑76                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        <  2:550663/76‑1                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        <  2:700393/76‑1                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        >  2:848695/1‑76                                                                           GGATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGT        <  1:852825/76‑1                                                                            GATCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCCCATCGGTA       >  1:460447/1‑76                                                                              TCTGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTAAG     <  2:1357219/76‑1                                                                                TGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTAAGAT   >  1:860076/1‑76                                                                                TGCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTAAGAT   >  1:781869/1‑76                                                                                 GCGCGCGGCTATTGATCTCGCCCAGCGTATTAGGATGGAAGGCCGCCGCCGCCAGTTGCAGCTCATCGGTAAGATG  <  1:817122/76‑1                                                                                 GCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTACGATG  >  1:221073/1‑76                                                                                                                                                              ACGGATGATCCCTTCGCGCGAATCACGATATTTCACCTGCTCGCCGGTAACATACAGCGTATCGCCTTTCGCCTGGATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/4217606‑4217526 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatctgCGCGCGGCTATTGAGCTCGCCCAGCGTATTAAGATGGAAGGTCGCCGCCGCCAGTTGCAGCTCATCGGTAAGATG  <  REL606/4440926‑4440852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.