| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4217526 = | 49 (0.880) | 52 (1.030) | 40/136 | 0.2 | 51.6% | coding (961/2097 nt) | yjbH | predicted porin |
| ? | REL606 | = 4440926 | 53 (1.050) | coding (190/552 nt) | yjgA | hypothetical protein | |||||
Only 100 of 115 total aligned reads displayed.
GATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGATCA > REL606/4217451‑4217601 | ggtGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCcac < 2:182232/74‑1 (MQ=255)gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCcac < 2:316159/76‑1 (MQ=255)gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCcac < 2:342081/76‑1 (MQ=255)gATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCcac < 2:1016520/76‑1 (MQ=255)catcttaccgatgagctgcaactggcggcggcggccttccatcctaatacgctgggcgagatcaatagccgcgcgc < 1:817122‑M1/1‑1 (MQ=255) atcttaccgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCa > 1:781869‑M1/75‑76 (MQ=255) cttaccgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGa < 2:1357219‑M1/4‑1 (MQ=255) ccATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGAt < 1:1565585/76‑1 (MQ=255) taccgatgggctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATc > 1:460447‑M1/71‑76 (MQ=255) accgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATcc > 2:1642025‑M1/70‑76 (MQ=255) accgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATcc < 1:852825‑M1/7‑1 (MQ=255) accgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATcc > 2:398775‑M1/70‑76 (MQ=255) accgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATcc < 2:550663‑M1/7‑1 (MQ=255) accgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATcc > 2:848695‑M1/70‑76 (MQ=255) aTTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATcc > 2:1750940/1‑76 (MQ=255) tttGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAg < 2:1651069/76‑1 (MQ=255) cgatgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAg > 2:1682917‑M1/68‑76 (MQ=255) ttGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAgg < 1:497255/76‑1 (MQ=255) tGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGc > 2:59722/1‑76 (MQ=255) tGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGc < 1:1373018/76‑1 (MQ=255) tgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCg > 2:807848‑M1/65‑76 (MQ=255) tgagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCg > 2:1650982‑M1/65‑76 (MQ=255) gcagcaTTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCg < 2:1042062/76‑1 (MQ=255) gcagcaTTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCg < 2:1483438/76‑1 (MQ=255) gagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATccaggaga > 1:11406‑M1/64‑73 (MQ=255) gagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGa > 1:1256387‑M1/64‑76 (MQ=255) gagctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGa < 1:1672481‑M1/13‑1 (MQ=255) agctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGgcgga < 1:1067067‑M1/14‑3 (MQ=255) gctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGaaa > 2:311170‑M1/62‑76 (MQ=255) gcaTTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGaaa > 2:488697/1‑76 (MQ=255) gcaTTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGaaa > 2:10278/1‑76 (MQ=255) ctgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAg > 2:478259‑M1/61‑76 (MQ=255) tgcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaataaccccgccCAGACCCAGGGGAAAgg < 1:399696‑M1/17‑1 (MQ=255) ttCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGc < 1:1541550/76‑1 (MQ=255) gcaactggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGc < 2:1609068‑M1/18‑1 (MQ=255) tCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCg < 1:585299/76‑1 (MQ=255) ggtggtGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGAt < 1:1370940/76‑1 (MQ=255) ctggcggcggcggccttccatcttaatgcgctgggcgagctcaatagtcgcgcgCAGATCCAGGCGAAAGGCGATa > 1:1542823‑M1/55‑76 (MQ=255) ctggcggcggcgaccttccatcttaatacgctgggcgagctcaatcggcgggcgCAGATACAGGGGAAAAGCGATa < 2:1109361‑M1/22‑1 (MQ=255) tggcggcggcgaccttccatcttaatacgctgggctagctcaatagccgcgcgCAGCTGCAGGCGAAAGGCCAtat < 2:1444187‑M1/23‑2 (MQ=255) ggtggCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACg < 1:1048153/76‑1 (MQ=255) ggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACg < 2:909387‑M1/24‑1 (MQ=255) ggcggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACg < 2:1695196‑M1/24‑1 (MQ=255) tggCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCt < 2:674372/76‑1 (MQ=255) cggcggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCt > 2:895941‑M1/51‑76 (MQ=255) cggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTa > 2:832562‑M1/48‑76 (MQ=255) ggcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTAt < 1:955523‑M1/30‑1 (MQ=255) gAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTAt < 1:388590/76‑1 (MQ=255) gAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTAt > 1:1086164/1‑76 (MQ=255) gcgaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATg < 2:1632825‑M1/31‑1 (MQ=255) aaTCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATg > 1:1708396/1‑76 (MQ=255) aaTCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATg > 2:319036/1‑76 (MQ=255) aaTCAGATAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATg > 1:1096488/1‑76 (MQ=255) tCAATTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGtt < 1:59722/76‑1 (MQ=255) ggccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGtt > 2:1437592‑M1/44‑76 (MQ=255) gaccttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGtt < 1:134422‑M1/33‑1 (MQ=255) cAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTa > 1:1799252/1‑76 (MQ=255) cttccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTAcc > 2:1400765‑M1/41‑76 (MQ=255) tccatcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCgg < 1:1509692‑M1/38‑1 (MQ=255) aaCGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGc > 2:1080956/1‑76 (MQ=255) aaCGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGc > 1:195701/1‑76 (MQ=255) aaCGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGc > 1:1209565/1‑76 (MQ=255) gcGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCg < 2:926043/75‑1 (MQ=255) catcttaatacgctgggcgcgctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCg > 2:1551346‑M1/37‑76 (MQ=255) catcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCg > 1:58967‑M1/37‑76 (MQ=255) aCGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCg < 2:140713/76‑1 (MQ=255) atcttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGa < 2:1481523‑M1/41‑1 (MQ=255) cTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGc > 1:213382/1‑76 (MQ=255) cTGTTGAAATACAATGCCGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGc < 1:1157487/76‑1 (MQ=255) ttaatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCa < 1:15312‑M1/44‑1 (MQ=255) tGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGGGCa > 1:1483789/1‑76 (MQ=255) taatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAg < 2:1421057‑M1/45‑1 (MQ=255) taatacgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAg > 2:1172961‑M1/32‑76 (MQ=255) gTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAg > 1:1251920/1‑76 (MQ=255) gTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAg < 1:1017850/76‑1 (MQ=255) gAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTg < 2:593904/76‑1 (MQ=255) acgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGa < 1:902324‑M1/49‑1 (MQ=255) acgctgggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGa > 1:379642‑M1/28‑76 (MQ=255) gcggggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGaaa > 1:1085039‑M1/26‑76 (MQ=255) tACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAat > 1:1233685/1‑76 (MQ=255) gggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGgcgaaagag < 2:1134178‑M1/54‑4 (MQ=255) gggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGaaattt < 2:1337779‑M1/54‑3 (MQ=255) gggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAatat < 2:296665‑M1/54‑1 (MQ=255) gggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAatat < 2:282828‑M1/54‑1 (MQ=255) ggcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATc > 1:137601‑M1/22‑76 (MQ=255) gcgagctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCg > 1:1008501‑M1/21‑76 (MQ=255) ggACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGAtt > 2:1286410/1‑76 (MQ=255) ctcaatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGAtt > 2:338331‑M1/16‑76 (MQ=255) caatagccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTcg < 2:1365043‑M1/63‑1 (MQ=255) ttGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTcgcg > 1:1406157/1‑76 (MQ=255) ccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGaa > 2:1183760‑M1/8‑76 (MQ=255) ccgcgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGaa > 1:1729657‑M1/8‑76 (MQ=255) tCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAggg < 2:1549409/76‑1 (MQ=255) cgcgCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAggg > 1:129879‑M1/5‑76 (MQ=255) ccACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGa > 1:1473638/1‑76 (MQ=255) cacaGCTCCAGGCAAAAGGCGATAGGCTGTATGTTACCGGCGAACAGGTGAAATATCGTGATTCGCGCGCAGGGat < 2:1084198/76‑1 (MQ=255) gCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGatc > 1:357942‑M1/2‑76 (MQ=255) gCAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGatc > 1:614049‑M1/2‑76 (MQ=255) CAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGatca < 1:149103‑M1/76‑1 (MQ=255) CAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGatca > 1:1449680‑M1/1‑76 (MQ=255) | GATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAATGCTGGACTTGCCGATCCACAGATCCAGGCGAAAGGCGATACGCTGTATGTTACCGGCGAGCAGGTGAAATATCGTGATTCGCGCGAAGGGATCA > REL606/4217451‑4217601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |