BRESEQ :: Marginal Predictions

breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	3,492,082	0	T	G	41.0%	79.2 / 20.7	61	V490G (GTG→GGG)	glpD	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding
*	REL606	154,497	0	T	G	30.2%	123.0 / 11.8	63	A191A (GCA→GCC)	yadL	predicted fimbrial‑like adhesin protein
*	REL606	2,296,329	0	A	C	29.0%	140.5 / 17.2	62	intergenic (‑149/‑66)	inaA/yfaH	hypothetical protein/hypothetical protein
*	REL606	1,747,903	0	G	T	23.8%	270.5 / 56.0	101	A8S (GCA→TCA)	ydiL	hypothetical protein
*	REL606	1,484,105	0	A	G	22.0%	116.3 / 11.4	50	G55G (GGA→GGG)	ydcU	predicted spermidine/putrescine transporter subunit

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 3354961	NA (NA)	3 (0.050)	3/132	6.6	3.8%	intergenic (‑23/+20)	alaU/ileU	tRNA‑Ala/tRNA‑Ile
*	?	REL606	4015589 =	87 (1.380)	3 (0.050)	3/132	6.6	3.8%	noncoding (76/77 nt)	ileT	tRNA‑Ile
*	?	REL606	2005136 =	73 (1.160)	3 (0.050)	3/134	6.6	3.8%	intergenic (‑1372/‑300)	cobU/yoeA	adenosylcobinamide kinase/adenosylcobinamide‑phosphate guanylyltransferase/b1995(b4582); putative hemine receptor
*	?	REL606	2005355 =	85 (1.510)	3 (0.050)	3/134	6.6	3.8%	intergenic (‑1591/‑81)	cobU/yoeA	adenosylcobinamide kinase/adenosylcobinamide‑phosphate guanylyltransferase/b1995(b4582); putative hemine receptor
*	?	REL606	1836658 =	66 (1.040)	3 (0.050)	3/142	6.9	4.2%	coding (801/1380 nt)	ydjK	predicted transporter
*	?	REL606	= 1875506	76 (1.270)	3 (0.050)	3/142	6.9	4.2%	intergenic (+179/‑5)	yeaB/sdaA	predicted NUDIX hydrolase/L‑serine deaminase I