| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,302,690 | Δ3,192 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1302690 | 1305881 | 3192 | 32 [1] | [1] 32 | [oppD]–[cls] | [oppD],oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1302689 | 1 (0.020) | 31 (0.480) | 25/150 | 1.8 | 96.9% | coding (342/1014 nt) | oppD | oligopeptide transporter ATP‑binding component |
| ? | REL606 | 1305882 = | 1 (0.020) | coding (358/1461 nt) | cls | cardiolipin synthetase | |||||
CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1302617‑1302689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTT > REL606/1305882‑1305956 CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGAT < 1:1202924/76‑1CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGAT > 1:1492524/1‑76 AATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCC > 2:1763513/1‑76 TGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTG > 1:214974/1‑76 TGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTG > 1:1215360/1‑76 GCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAG < 2:791151/76‑1 CATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGC > 1:1397390/1‑76 GAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGAT < 2:1522184/76‑1 TCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCC > 2:1669138/1‑76 CAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCT < 2:1712839/76‑1 CAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCT > 1:9627/1‑76 CAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCT < 1:976538/76‑1 AATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTG > 2:493416/1‑76 TGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGC > 2:635066/1‑76 TGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAA > 2:52778/1‑76 TGAACAAATCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAA > 1:239631/1‑76 TCTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAAT < 2:933017/76‑1 CTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATA < 2:1048375/76‑1 CTCAATGATTTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATA < 1:1618381/76‑1 ATTTTTCAGGACCCAATGGATTCCCTTAGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGC < 2:1434402/76‑1 TTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAG > 1:1714167/1‑76 TTTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAG > 1:1147410/1‑76 TTTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGC > 2:122344/1‑76 TTCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCG > 1:2025540/1‑76 TCAGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGA < 1:854835/76‑1 AGGACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACA < 2:231486/76‑1 ACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTG < 2:399156/76‑1 ACCCAATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTG > 1:1024496/1‑76 ATGGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATT < 2:1397390/76‑1 GGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTCTTTT > 1:1010941/1‑76 GGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTT > 1:615879/1‑76 CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1302617‑1302689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTT > REL606/1305882‑1305956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |