| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,302,690 | Δ3,192 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1302690 | 1305881 | 3192 | 32 [1] | [1] 32 | [oppD]–[cls] | [oppD],oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1302689 | 1 (0.020) | 31 (0.480) | 25/150 | 1.8 | 96.9% | coding (342/1014 nt) | oppD | oligopeptide transporter ATP‑binding component |
| ? | REL606 | 1305882 = | 1 (0.020) | coding (358/1461 nt) | cls | cardiolipin synthetase | |||||
TTATGGCGCGCGAGCTGGATGTCGCGGATTAACGCCTGCATCACATCATCTGACTCGGTCATCAGTTGTAGCTGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTT > REL606/1305809‑1305956 | cctcaatttgccagagcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGAt < 1:1202924‑M2/3‑1 (MQ=255)cctcaatttgccagagcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGAt > 1:1492524‑M2/74‑76 (MQ=255) aatttgccagagcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTccc > 2:1763513‑M2/70‑76 (MQ=255) tgccagagcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTg > 1:214974‑M2/66‑76 (MQ=255) tgccagagcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTg > 1:1215360‑M2/66‑76 (MQ=255) gCTGGATGTCGCGGATTAACGCCTGCATCACATCATCTGACTCGGTCATCAGTTGTAGCTGATTCCCTTTGAcccc > 1:558611/1‑76 (MQ=255) gcatgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAg < 2:791151‑M2/18‑1 (MQ=255) catgaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGc > 1:1397390‑M2/58‑76 (MQ=255) gaactcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGAt < 2:1522184‑M2/22‑1 (MQ=255) tcaataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATcccc > 2:1669138‑M2/51‑76 (MQ=255) caataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCt < 2:1712839‑M2/27‑1 (MQ=255) caataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCt > 1:9627‑M2/50‑76 (MQ=255) caataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCt < 1:976538‑M2/27‑1 (MQ=255) aataaactgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTg > 2:493416‑M2/49‑76 (MQ=255) tgcgcgctgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGc > 2:635066‑M2/42‑76 (MQ=255) tgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCaaa > 2:52778‑M2/35‑76 (MQ=255) tgaacaaatctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCaaa > 1:239631‑M2/35‑76 (MQ=255) tctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGaat < 2:933017‑M2/50‑1 (MQ=255) ctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGaata < 2:1048375‑M2/51‑1 (MQ=255) ctcaatgatttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGaata < 1:1618381‑M2/51‑1 (MQ=255) atttttcaggacccaatgGATTCCCTTAGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGgcgc < 2:1434402‑M2/58‑1 (MQ=255) ttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAg > 1:1714167‑M2/17‑76 (MQ=255) ttttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAg > 1:1147410‑M2/17‑76 (MQ=255) tttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGc > 2:122344‑M2/16‑76 (MQ=255) ttcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCg > 1:2025540‑M2/15‑76 (MQ=255) tcaggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGa < 1:854835‑M2/63‑1 (MQ=255) aggacccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGaca < 2:231486‑M2/65‑1 (MQ=255) acccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTg < 2:399156‑M2/68‑1 (MQ=255) acccaatgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTg > 1:1024496‑M2/9‑76 (MQ=255) atgGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTAtt < 2:1397390‑M2/73‑1 (MQ=255) gGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTCtttt > 1:1010941‑M2/2‑76 (MQ=255) gGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTAtttt > 1:615879‑M2/2‑76 (MQ=255) | TTATGGCGCGCGAGCTGGATGTCGCGGATTAACGCCTGCATCACATCATCTGACTCGGTCATCAGTTGTAGCTGATTCCCTTTGACCCCAGCGATCCCCTGACGACGCTCGCAAAGCTTGAATAATGGCGCAGCGACACTGCTATTTT > REL606/1305809‑1305956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |