| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,302,690 | Δ3,192 bp | [oppD]–[cls] | [oppD], oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1302690 | 1305881 | 3192 | 32 [1] | [1] 32 | [oppD]–[cls] | [oppD],oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1302689 | 1 (0.020) | 31 (0.480) | 25/150 | 1.8 | 96.9% | coding (342/1014 nt) | oppD | oligopeptide transporter ATP‑binding component |
| ? | REL606 | 1305882 = | 1 (0.020) | coding (358/1461 nt) | cls | cardiolipin synthetase | |||||
CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGACTTCGTTGAATCCCTATATGCGCGTCGGTGAGCAGTTAATGGAAGTGCTGATGCTGCATAAGAACATGAGCAAA > REL606/1302617‑1302764 | ccTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgat < 1:1202924‑M1/76‑4 (MQ=255)ccTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgat > 1:1492524‑M1/1‑73 (MQ=255) aaTTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccc > 2:1763513‑M1/1‑69 (MQ=255) tGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttg > 1:1215360‑M1/1‑65 (MQ=255) tGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttg > 1:214974‑M1/1‑65 (MQ=255) gCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccag < 2:791151‑M1/76‑19 (MQ=255) cATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagc > 1:1397390‑M1/1‑57 (MQ=255) gAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgat < 2:1522184‑M1/76‑23 (MQ=255) tCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccc > 2:1669138‑M1/1‑50 (MQ=255) cAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccct < 2:1712839‑M1/76‑28 (MQ=255) cAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccct < 1:976538‑M1/76‑28 (MQ=255) cAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccct > 1:9627‑M1/1‑49 (MQ=255) aaTAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctg > 2:493416‑M1/1‑48 (MQ=255) aaaCTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGACTTCGTTGAATCCCTATATGCGCGTCGGTg > 2:451175/1‑76 (MQ=255) tGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgc > 2:635066‑M1/1‑41 (MQ=255) tGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaa > 1:239631‑M1/1‑34 (MQ=255) tGAACAAATCTCAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaa > 2:52778‑M1/1‑34 (MQ=255) tctcAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaat < 2:933017‑M1/76‑51 (MQ=255) ctcAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaata < 2:1048375‑M1/76‑52 (MQ=255) ctcAATGATTTTTCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaata < 1:1618381‑M1/76‑52 (MQ=255) aTTTTTCAGGACCCAATGgattcccttagaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgc < 2:1434402‑M1/76‑59 (MQ=255) ttttCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcag > 1:1714167‑M1/1‑16 (MQ=255) ttttCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcag > 1:1147410‑M1/1‑16 (MQ=255) tttCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagc > 2:122344‑M1/1‑15 (MQ=255) ttCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcg > 1:2025540‑M1/1‑14 (MQ=255) tCAGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcga < 1:854835‑M1/76‑64 (MQ=255) aGGACCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgaca < 2:231486‑M1/76‑66 (MQ=255) aCCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgacactg < 2:399156‑M1/76‑69 (MQ=255) aCCCAATGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgacactg > 1:1024496‑M1/1‑8 (MQ=255) aTGgattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgacactgctatt < 2:1397390‑M1/76‑74 (MQ=255) ggattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgacactgctctttt > 1:1010941‑M1/1‑1 (MQ=255) ggattccctttgaccccagcgatcccctgacgacgctcgcaaagcttgaataatggcgcagcgacactgctatttt > 1:615879‑M1/1‑1 (MQ=255) | CCTCAATTTGCCAGAGCATGAACTCAATAAACTGCGCGCTGAACAAATCTCAATGATTTTTCAGGACCCAATGACTTCGTTGAATCCCTATATGCGCGTCGGTGAGCAGTTAATGGAAGTGCTGATGCTGCATAAGAACATGAGCAAA > REL606/1302617‑1302764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |