| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,299,879 | Δ6,195 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1299879 | 1306073 | 6195 | 39 [1] | [1] 39 | [oppA]–[cls] | [oppA],oppB,oppC,oppD,oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1299878 | 1 (0.020) | 38 (0.810) | 30/148 | 0.6 | 97.5% | coding (1103/1632 nt) | oppA | oligopeptide transporter subunit |
| ? | REL606 | 1306074 = | 1 (0.020) | coding (166/1461 nt) | cls | cardiolipin synthetase | |||||
CACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1299804‑1299878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGC > REL606/1306074‑1306145 CACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAG < 1:562074/76‑1 TCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATA < 1:685042/76‑1 TCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATA < 2:812310/76‑1 TCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATA > 1:296422/1‑76 CCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAG > 1:1138255/1‑76 CCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAG < 1:355725/76‑1 CCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAG > 1:266556/1‑76 CCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCA > 2:228575/1‑76 CGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAA < 2:312523/76‑1 TATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATA > 2:1037846/1‑76 TATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATA > 1:16676/1‑76 TATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATA > 2:891202/1‑76 ATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAA > 2:580294/1‑76 ATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAA > 1:841349/1‑76 TGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCC < 1:95883/76‑1 ATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGA < 1:122779/76‑1 GGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACT < 2:918130/76‑1 GGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACT < 1:872109/76‑1 GGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACT < 1:1428143/76‑1 CGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAA < 2:1106866/76‑1 CAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACG > 2:219707/1‑76 AAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGC < 2:1189421/76‑1 TTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGA < 1:351071/76‑1 CGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAA < 1:985983/76‑1 GGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAAT < 2:1475386/76‑1 AATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCA > 2:491612/1‑76 ATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAA < 1:1108568/76‑1 TGGTTTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAAC > 1:221327/1‑76 TTGGCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCC > 1:700826/1‑76 GCTGGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGG > 1:1321198/1‑76 GGAGCCAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCA < 2:806846/76‑1 CAGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCG > 2:201320/1‑76 AGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGG < 2:390387/76‑1 AGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGG > 1:222266/1‑76 AGGAAAAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGG > 1:940686/1‑76 AAACGTAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGA < 1:1366225/76‑1 TAACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGC < 1:1451609/76‑1 ACGAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGC < 2:867189/76‑1 CACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1299804‑1299878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGC > REL606/1306074‑1306145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |