| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,299,879 | Δ6,195 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1299879 | 1306073 | 6195 | 39 [1] | [1] 39 | [oppA]–[cls] | [oppA],oppB,oppC,oppD,oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1299878 | 1 (0.020) | 38 (0.810) | 30/148 | 0.6 | 97.5% | coding (1103/1632 nt) | oppA | oligopeptide transporter subunit |
| ? | REL606 | 1306074 = | 1 (0.020) | coding (166/1461 nt) | cls | cardiolipin synthetase | |||||
CACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAA > REL606/1299804‑1299950 | cacTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAg < 1:562074‑M1/76‑2 (MQ=255) tCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgata < 1:685042‑M1/76‑5 (MQ=255) tCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgata < 2:812310‑M1/76‑5 (MQ=255) tCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgata > 1:296422‑M1/1‑72 (MQ=255) ccACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgatag > 1:1138255‑M1/1‑71 (MQ=255) ccACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgatag < 1:355725‑M1/76‑6 (MQ=255) ccACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgatag > 1:266556‑M1/1‑71 (MQ=255) ccGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggca > 2:228575‑M1/1‑68 (MQ=255) cGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaa < 2:312523‑M1/76‑10 (MQ=255) tataCTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaata > 2:1037846‑M1/1‑65 (MQ=255) tataCTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaata > 1:16676‑M1/1‑65 (MQ=255) tataCTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaata > 2:891202‑M1/1‑65 (MQ=255) ataCTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataa > 2:580294‑M1/1‑64 (MQ=255) ataCTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataa > 1:841349‑M1/1‑64 (MQ=255) tGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattcc < 1:95883‑M1/76‑17 (MQ=255) aTGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccga < 1:122779‑M1/76‑19 (MQ=255) ggCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgact < 2:918130‑M1/76‑21 (MQ=255) ggCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgact < 1:872109‑M1/76‑21 (MQ=255) ggCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgact < 1:1428143‑M1/76‑21 (MQ=255) cgcAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaa < 2:1106866‑M1/76‑23 (MQ=255) cAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacg > 2:219707‑M1/1‑52 (MQ=255) aaaTTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggc < 2:1189421‑M1/76‑27 (MQ=255) ttGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcaga < 1:351071‑M1/76‑30 (MQ=255) cGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataa < 1:985983‑M1/76‑40 (MQ=255) ggAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataat < 2:1475386‑M1/76‑41 (MQ=255) aaTGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatca > 2:491612‑M1/1‑34 (MQ=255) aTGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaa < 1:1108568‑M1/76‑44 (MQ=255) tGGTTTGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaac > 1:221327‑M1/1‑32 (MQ=255) ttGGCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagcc > 1:700826‑M1/1‑28 (MQ=255) gCTGGAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccagg > 1:1321198‑M1/1‑25 (MQ=255) ggAGCCAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggcca < 2:806846‑M1/76‑55 (MQ=255) cAGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcg > 2:201320‑M1/1‑17 (MQ=255) aGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcgg > 1:222266‑M1/1‑16 (MQ=255) aGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcgg < 2:390387‑M1/76‑61 (MQ=255) aGGAAAAACGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcgg > 1:940686‑M1/1‑16 (MQ=255) aaaCGTAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcggaggga < 1:1366225‑M1/76‑66 (MQ=255) tAACGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcggagggaactgc < 1:1451609‑M1/76‑71 (MQ=255) aCGAgataggcaataattccgactaacggcagaatgtaaataatcaacagccaggccatcgcggagggaactgcgc < 2:867189‑M1/76‑73 (MQ=255) aCGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATaa > 1:459034/1‑76 (MQ=255) | CACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAA > REL606/1299804‑1299950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |