| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 1,299,879 | Δ6,195 bp | [oppA]–[cls] | [oppA], oppB, oppC, oppD, oppF, yciU, [cls] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 1299879 | 1306073 | 6195 | 39 [1] | [1] 39 | [oppA]–[cls] | [oppA],oppB,oppC,oppD,oppF,yciU,[cls] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1299878 | 1 (0.020) | 38 (0.810) | 30/148 | 0.6 | 97.5% | coding (1103/1632 nt) | oppA | oligopeptide transporter subunit |
| ? | REL606 | 1306074 = | 1 (0.020) | coding (166/1461 nt) | cls | cardiolipin synthetase | |||||
ATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCAGCGCGGCGTTTGCCTAAATGGAGCTCGCCAACGGCAAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGC > REL606/1305999‑1306145 | cactccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgag < 1:562074‑M2/1‑1 (MQ=255) tccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATa < 1:685042‑M2/4‑1 (MQ=255) tccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATa < 2:812310‑M2/4‑1 (MQ=255) tccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATa > 1:296422‑M2/73‑76 (MQ=255) ccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAg > 1:1138255‑M2/72‑76 (MQ=255) ccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAg < 1:355725‑M2/5‑1 (MQ=255) ccaccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAg > 1:266556‑M2/72‑76 (MQ=255) ccgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCa > 2:228575‑M2/69‑76 (MQ=255) cgtatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaa < 2:312523‑M2/9‑1 (MQ=255) tatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaata > 2:1037846‑M2/66‑76 (MQ=255) tatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaata > 1:16676‑M2/66‑76 (MQ=255) tatactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaata > 2:891202‑M2/66‑76 (MQ=255) atactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaataa > 2:580294‑M2/65‑76 (MQ=255) atactgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCaataa > 1:841349‑M2/65‑76 (MQ=255) tgatggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTcc < 1:95883‑M2/16‑1 (MQ=255) atggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGa < 1:122779‑M2/18‑1 (MQ=255) ggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACt < 2:918130‑M2/20‑1 (MQ=255) ggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACt < 1:872109‑M2/20‑1 (MQ=255) ggcgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACt < 1:1428143‑M2/20‑1 (MQ=255) cgcaaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTaa < 2:1106866‑M2/22‑1 (MQ=255) caaaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACg > 2:219707‑M2/53‑76 (MQ=255) aaattgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGc < 2:1189421‑M2/26‑1 (MQ=255) ttgactcagccggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGa < 1:351071‑M2/29‑1 (MQ=255) cggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAaataa < 1:985983‑M2/39‑1 (MQ=255) ggaatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAaataat < 2:1475386‑M2/40‑1 (MQ=255) cggcgTTTGCCTAAATGGAGCTCGCCAACGGCAAGATAGGCAATAATTCCAACTAACGGCAGAATGTAAATAATCa < 1:411138/76‑1 (MQ=255) aatggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCa > 2:491612‑M2/35‑76 (MQ=255) atggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCaa < 1:1108568‑M2/43‑1 (MQ=255) tggtttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAAc > 1:221327‑M2/33‑76 (MQ=255) ttggctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGcc > 1:700826‑M2/29‑76 (MQ=255) gctggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAgg > 1:1321198‑M2/26‑76 (MQ=255) ggagccaggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCa < 2:806846‑M2/54‑1 (MQ=255) caggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATcgcg > 2:201320‑M2/18‑76 (MQ=255) aggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCgg > 1:222266‑M2/17‑76 (MQ=255) aggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCgg > 1:940686‑M2/17‑76 (MQ=255) aggaaaaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCgg < 2:390387‑M2/60‑1 (MQ=255) aaacgtaacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGa < 1:1366225‑M2/65‑1 (MQ=255) taacgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTgc < 1:1451609‑M2/70‑1 (MQ=255) acgaGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTgcgc < 2:867189‑M2/72‑1 (MQ=255) | ATTTTGCGGTGGAAGGCCACATCGCTCTGGCGCGCTCAGCGCGGCGTTTGCCTAAATGGAGCTCGCCAACGGCAAGATAGGCAATAATTCCGACTAACGGCAGAATGTAAATAATCAACAGCCAGGCCATCGCGGAGGGAACTGCGC > REL606/1305999‑1306145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |