| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 71 (1.250) | 6 (0.120) | 4/134 | 5.2 | 7.2% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 91 (1.800) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039935‑2039854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGG > REL606/2040304‑2040378 CGAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGT < 2:1328043/76‑1CGAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGT < 2:1328032/76‑1CGAATATACATAGCAGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGT < 1:132766/76‑1 ATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTAT > 2:629183/1‑76 ATACATAGCGGTACTGGATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTT < 2:104364/76‑1 TGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCT < 2:1397862/76‑1 TAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAA < 2:697610/76‑1 TAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAA < 2:1640452/76‑1 GGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAAT < 2:398714/76‑1 TGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATAT < 2:1448222/76‑1 TGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATAT < 2:1448215/76‑1 tttTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATATTACTTTATCAGCAACACTATT > 2:80269/4‑76 GTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGG < 1:593267/76‑1 GTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGG < 1:593252/76‑1 ATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTA < 1:13041/76‑1 ATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTA < 1:13035/76‑1 TTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATT > 1:228831/1‑76 TTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTG < 1:1782034/76‑1 TTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTG < 1:1556682/76‑1 TTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTG < 1:1553720/76‑1 TTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTG < 1:1408055/76‑1 TCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGG > 2:359104/1‑76 CGAATATACATAGCGGTACTGTATTTATAGGCAAACATGTTATCATAGGTTGCGGAAGTATTGTTCTTCCGGATGTTATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2039935‑2039854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttattttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGG > REL606/2040304‑2040378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |