| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 71 (1.250) | 6 (0.120) | 4/134 | 5.2 | 7.2% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 91 (1.800) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 105 total aligned reads displayed.
AAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGT > REL606/2040229‑2040379 | aaGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTc > 2:881884/1‑76 (MQ=255) cccATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTcaca > 1:1819412/1‑76 (MQ=255) ccATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCacaa < 1:30075/76‑1 (MQ=255) aTTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCacaaca > 1:548369/1‑76 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt < 1:1490263/76‑1 (MQ=255) ttCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAt < 1:1490253/76‑1 (MQ=255) tCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAtc < 1:198634/76‑1 (MQ=255) tCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAtc > 1:134887/1‑76 (MQ=255) cTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAAtct > 2:1052176/1‑76 (MQ=255) tttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATctct < 1:885782/76‑1 (MQ=255) tttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATctct < 1:1397862/76‑1 (MQ=255) ttAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCtt < 2:1083136/76‑1 (MQ=255) tAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTc < 1:319495/76‑1 (MQ=255) tAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTc > 1:1698781/1‑76 (MQ=255) aaCTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCa > 2:561914/1‑76 (MQ=255) aCTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAt < 1:1271182/76‑1 (MQ=255) aCTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAt > 2:27923/1‑76 (MQ=255) aCTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAAATTGGTTATTTTCACAACAATCTCTTCAt < 1:1271197/76‑1 (MQ=255) aCTGTATTTCAACTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAt < 1:1271192/76‑1 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTTTTCAttt < 1:1183319/76‑1 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt < 1:381402/76‑1 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt > 1:1515965/1‑76 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt < 2:669678/76‑1 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt > 2:888400/1‑76 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt > 2:276622/1‑76 (MQ=255) tGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCAttt < 1:202853/76‑1 (MQ=255) gTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTa < 1:730847/76‑1 (MQ=255) gTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTa > 2:954882/1‑76 (MQ=255) gTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTa < 1:730834/76‑1 (MQ=255) gTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTa < 1:730802/76‑1 (MQ=255) tATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTGTTTTCACAACAGTCTCTTCATTTaa < 1:1640452/76‑1 (MQ=255) tATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTaa < 1:697610/76‑1 (MQ=255) tATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTaa > 2:717863/1‑76 (MQ=255) tATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTaa < 1:394867/76‑1 (MQ=255) aTTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTaaa < 2:551398/76‑1 (MQ=255) tttCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAt > 2:547339/1‑76 (MQ=255) tttCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAAt < 1:398714/76‑1 (MQ=255) aTCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGt > 1:1721814/1‑76 (MQ=255) cTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtat < 1:853510/76‑1 (MQ=255) cTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtat < 2:56699/76‑1 (MQ=255) tAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtata > 2:1673873/1‑76 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatgt < 1:1448215/76‑3 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatat < 2:1653726/76‑1 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatat > 2:131805/1‑76 (MQ=255) aaaTAGGCCATATCACATCTTACCCAATAAGAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatat < 1:1448222/76‑1 (MQ=255) aaTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGtatata < 1:1475164/76‑1 (MQ=255) aTAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTatatat < 1:586872/76‑1 (MQ=255) aGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTg < 1:375209/76‑1 (MQ=255) ccATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCa < 1:663300/76‑1 (MQ=255) ccATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCa < 1:1214448/76‑1 (MQ=255) ccATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCa < 1:1214466/76‑1 (MQ=255) cATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCaa > 2:525167/1‑76 (MQ=255) cATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGCATATATTGGCaa > 2:525176/1‑76 (MQ=255) atatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAg < 1:66028/76‑1 (MQ=255) atatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATATGTATATATTATCAAg > 1:261662/1‑76 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGc < 2:1302718/76‑1 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGc < 1:975348/76‑1 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGc < 1:975321/76‑1 (MQ=255) tatCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGNATATATTGGCAAGc < 1:995737/76‑1 (MQ=255) atCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCaaagg < 2:454169/76‑4 (MQ=255) tCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCAt > 2:1524413/1‑76 (MQ=255) cacaTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATa < 1:916409/76‑1 (MQ=255) caTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAgg < 1:278294/76‑1 (MQ=255) caTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAgg < 1:1013537/76‑1 (MQ=255) caTCTTACCCAATAATAAATTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAgg < 1:720971/76‑1 (MQ=255) aTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGa < 2:676473/76‑1 (MQ=255) aTCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGa < 2:676495/76‑1 (MQ=255) tCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGAc > 1:1818406/1‑76 (MQ=255) tCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGAc > 2:948214/1‑76 (MQ=255) cTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACt > 2:1773364/1‑76 (MQ=255) tACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACttt > 1:1778310/1‑76 (MQ=255) cAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCa < 1:1573071/76‑1 (MQ=255) taataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGcn < 1:1708296/76‑2 (MQ=255) taataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCa < 1:330179/76‑1 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa > 1:1002236/1‑76 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa < 2:604996/76‑1 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa < 1:1705615/76‑1 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa < 1:792282/76‑1 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa < 1:689995/76‑1 (MQ=255) aataatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCaa < 1:699264/76‑1 (MQ=255) taatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAaca < 2:111631/76‑1 (MQ=255) taatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAaca < 1:216429/76‑1 (MQ=255) taatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAaca < 1:915646/76‑1 (MQ=255) taatTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAaca > 2:1410311/1‑76 (MQ=255) tttGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActa > 1:1749946/1‑76 (MQ=255) ttGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActat < 1:699742/76‑1 (MQ=255) ttGGTTATTTTCACAACAATCTCGTCATTTAAATCTGTATATATTGGCAAGCATAGGGCTTTATCAGCAACActat < 2:545946/76‑1 (MQ=255) tttttATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATATTACTTTATCAGCAACActatt > 2:80269/4‑76 (MQ=255) gTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattgg < 1:593267/76‑1 (MQ=255) gTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattgg < 1:593252/76‑1 (MQ=255) aTTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggcta < 1:13041/76‑1 (MQ=255) aTTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggcta < 1:13035/76‑1 (MQ=255) tttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctatt > 1:228831/1‑76 (MQ=255) ttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattg < 1:1782034/76‑1 (MQ=255) ttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattg < 1:1408055/76‑1 (MQ=255) ttCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattg < 1:1553720/76‑1 (MQ=255) tCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACActattggctattgg > 2:359104/1‑76 (MQ=255) cacaACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGt < 2:836266/76‑1 (MQ=255) cacaACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGt < 2:836286/76‑1 (MQ=255) cacaACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGt < 1:457683/76‑1 (MQ=255) | AAGCCCATTTCTTTTAACTGTATTTCATCTAAATAGGCCATATCACATCTTACCCAATAATAATTTGGTTATTTTCACAACAATCTCTTCATTTAAATCTGTATATATTGGCAAGCATAGGACTTTATCAGCAACACTATTGGCTATTGGT > REL606/2040229‑2040379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |