| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2039854 = | 71 (1.250) | 6 (0.120) | 4/134 | 5.2 | 7.2% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 91 (1.800) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATACCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATGT > REL606/2039779‑2039928 | ataCCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTa < 1:939048/76‑1 (MQ=255)ataCCTACAGTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTa < 1:939031/76‑1 (MQ=255) taCCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaa > 1:911084/1‑76 (MQ=255) aCCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaa < 2:59045/76‑1 (MQ=255) aCCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTaaa > 1:797946/1‑76 (MQ=255) tACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATa > 2:207484/1‑76 (MQ=255) aCATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATaa < 1:39673/76‑1 (MQ=255) aCATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATaa > 2:1088322/1‑76 (MQ=255) aCATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATaa < 1:1347353/76‑1 (MQ=255) aCATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATaa < 1:1347374/76‑1 (MQ=255) aTTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACa > 2:675666/1‑76 (MQ=255) aTTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACa < 1:395042/76‑1 (MQ=255) ttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATc > 1:1647058/1‑76 (MQ=255) ttACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATc < 1:564601/76‑1 (MQ=255) tACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATcc > 1:1793243/1‑76 (MQ=255) aCCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCg < 1:439133/76‑1 (MQ=255) ccGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCgg < 1:1393651/76‑1 (MQ=255) ccGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCgg < 2:1348223/76‑1 (MQ=255) ccgaaaaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGga < 1:1215355/73‑1 (MQ=255) tAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaag < 1:1251086/76‑1 (MQ=255) tAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaag < 1:1707049/76‑1 (MQ=255) tAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaag < 1:478891/76‑1 (MQ=255) aaaaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaaga < 1:1053620/76‑1 (MQ=255) aaaGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGgaagaa < 1:555220/76‑1 (MQ=255) aGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACa < 1:612892/76‑1 (MQ=255) cTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAGGAACAAt < 1:1169091/76‑1 (MQ=255) cTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAAt < 2:872319/76‑1 (MQ=255) cacaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACt < 1:1121837/76‑1 (MQ=255) acaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACtt > 2:1265370/1‑76 (MQ=255) acaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACtt > 1:598997/1‑76 (MQ=255) acaATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACtt > 1:1094889/1‑76 (MQ=255) aaTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTcc > 1:1200410/1‑76 (MQ=255) aTCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCg < 1:1034914/76‑1 (MQ=255) tCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTccac < 2:662613/76‑3 (MQ=255) ccTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCa > 2:176379/1‑76 (MQ=255) ctctTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCaa > 1:1578609/1‑76 (MQ=255) tttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCt > 1:274545/1‑76 (MQ=255) tttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCt < 2:611003/76‑1 (MQ=255) ttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTa < 2:1404775/76‑1 (MQ=255) ttGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTa < 2:1700947/76‑1 (MQ=255) tggACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAAGACTTCCGCAACCTa < 2:354851/74‑1 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt < 2:1020041/76‑1 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt > 1:551165/1‑76 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt < 2:1020030/76‑1 (MQ=255) tGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTAt < 2:364416/76‑1 (MQ=255) gACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACNTCCGCAACCTATg < 1:1226164/76‑1 (MQ=255) aCTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGa > 1:57740/1‑76 (MQ=255) gaCAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATa < 2:48724/75‑1 (MQ=255) aCAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATaa > 2:1554095/1‑76 (MQ=255) aGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACa < 1:95622/76‑1 (MQ=255) aGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACa > 2:1350560/1‑76 (MQ=255) aGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACa > 2:1350580/1‑76 (MQ=255) agagCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGtt < 2:1121979/76‑1 (MQ=255) gagCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGttt < 2:567315/76‑1 (MQ=255) gagCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGttt < 1:1002672/76‑1 (MQ=255) cTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGcc > 2:1477090/1‑76 (MQ=255) cTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGcc > 1:766165/1‑76 (MQ=255) tCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCt < 2:1058622/76‑1 (MQ=255) ccAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCta > 1:779463/1‑76 (MQ=255) cAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCtat > 1:1508297/1‑76 (MQ=255) aaTTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCtata < 1:790879/76‑1 (MQ=255) gctgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATa < 1:513692/76‑1 (MQ=255) tgcACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACa > 1:1124557/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt > 2:577255/1‑76 (MQ=255) cACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGt < 1:1621631/76‑1 (MQ=255) aCCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTa < 1:92842/76‑1 (MQ=255) cccTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTAc < 1:1545990/76‑1 (MQ=255) cccTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTAc < 1:1546005/76‑1 (MQ=255) cccTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTAc < 2:748498/76‑1 (MQ=255) tGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTAt < 1:1794619/76‑1 (MQ=255) tAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATgt > 1:574635/1‑76 (MQ=255) | ATACCTACATTTACCGTAAAAGCTTCACAATCCTCTTTGACTACAGAAAGAGCTCCAATTGCTGCACCCTCATGTAAAATAACATCCGGAAGAACAATACTTCCGCAACCTATGATAACATGTTTGCCTATAAATACAGTACCGCTATGT > REL606/2039779‑2039928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |