| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | REL606 | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2772854 = | NA (NA) | 45 (0.830) | 38/144 | 0.3 | 100% | noncoding (1/1343 nt) | IS186 | repeat region |
| ? | REL606 | = 4524527 | 0 (0.000) | coding (499/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | REL606 | = 2774196 | NA (NA) | 70 (1.290) | 52/144 | 0.1 | 100% | noncoding (1343/1343 nt) | IS186 | repeat region |
| ? | REL606 | 4524522 = | 0 (0.000) | coding (494/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
ATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 | aTTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGGACACCCTGAACGGGGGGGGAAAACCCCATa > 1:543783/1‑76 (MQ=38) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAAGCCCATaa < 1:1178649/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATaa < 1:1494382/76‑1 (MQ=255) ttttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACACCATaa < 1:1481949/76‑1 (MQ=255) tttGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAg < 1:490840/76‑1 (MQ=255) aTTCTTCTTGAAGTCCGCTTAACCCCGGCTGGAGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCt < 1:831916/76‑1 (MQ=255) ttCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTa < 1:1515557/76‑1 (MQ=255) tCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACtt < 1:1657687/76‑1 (MQ=255) gTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTaa > 2:1701876/1‑76 (MQ=255) gTTTATCCCCGCTGGCGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGt < 1:1114540/76‑1 (MQ=255) ttATCCCCGCTGGCGCGGGGAAAACCCTGAACGGTGGGGTAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTAt > 2:575160/1‑76 (MQ=37) tcgccccGCGGGGGGGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTTTGGTAtt < 1:660904/73‑1 (MQ=25) tacccccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:669066/73‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:468184/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:178651/76‑1 (MQ=255) tATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1521369/76‑1 (MQ=255) tATCCCCGCGGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTAtt < 1:1221417/76‑1 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa > 2:130364/1‑76 (MQ=255) aTCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa < 1:29334/76‑1 (MQ=255) tCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGGAAAACCCCATAAGCGCTAACTTAAGGGGTGTGGTATTAc > 2:628582/1‑76 (MQ=255) tCCCCGCCCGCGCGGGGTACAACCTTCACCGAGGGGGAAAAACCCACAAGCGCTAACCTAAAGGTTGATGGATTAc > 2:1321145/1‑76 (MQ=255) ccccGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg < 2:1386379/76‑1 (MQ=255) cGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 2:391951/76‑1 (MQ=255) cTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 2:467513/1‑76 (MQ=255) tGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat < 2:496090/76‑1 (MQ=255) cggCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat < 1:1153026/75‑1 (MQ=255) aagcggGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGat < 2:1082393/74‑1 (MQ=21) gcgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:239673/76‑1 (MQ=255) cgGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt > 1:1710234/1‑76 (MQ=255) ggggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt < 1:668807/76‑1 (MQ=255) ggggAACACCCCGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTNCGCCTGATATGAtt < 1:1001164/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGNCTGATATGATTTa < 1:1231613/76‑1 (MQ=255) ggAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa < 2:128792/76‑1 (MQ=255) gAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 1:687963/1‑76 (MQ=255) gacacCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAc < 1:1454263/75‑1 (MQ=255) aaCACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCNGATATGATTTAAc < 1:1233766/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 1:946146/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 1:391070/76‑1 (MQ=255) acCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg < 1:1195471/76‑1 (MQ=255) cTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCg > 1:1528296/1‑76 (MQ=255) tGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGa < 1:1050379/76‑1 (MQ=255) gaCGGTGGGGAAAATCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:34697/75‑1 (MQ=255) aaCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg > 2:299601/1‑76 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:315149/76‑1 (MQ=255) aCGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:1160514/76‑1 (MQ=255) ggTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:790198/1‑76 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAATGTGCCGATGAAtt < 1:1221966/76‑1 (MQ=255) gTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt < 2:1492009/76‑1 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAttn < 1:1449337/76‑2 (MQ=255) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1442919/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 1:1315601/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa < 2:1756702/76‑1 (MQ=40) tGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa > 2:219751/1‑76 (MQ=40) ggAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:1037658/1‑76 (MQ=35) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:480500/76‑1 (MQ=34) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 1:1273407/76‑1 (MQ=34) gAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActct < 2:1245624/76‑1 (MQ=34) aaaaCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa < 2:1356979/76‑1 (MQ=31) | ATTTTGATTCATCGTGATGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCTGAACGGTGGGGAAAAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCA > REL606/2772784‑2772924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |