| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4459858 = | 179 (2.860) | 3 (0.050) | 3/140 | 6.8 | 1.9% | coding (1145/1653 nt) | yjgL | hypothetical protein |
| ? | REL606 | 4460139 = | 142 (2.430) | coding (1426/1653 nt) | yjgL | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4459937‑4459858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAGATG > REL606/4460139‑4460213 TTGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTT > 2:1205412/1‑76TTGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTT > 1:959611/1‑76TTGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTT < 1:399689/76‑1 TGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTT > 2:319631/1‑76 TGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTT < 2:1243994/76‑1 TGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTT > 1:28720/1‑76 TGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTT > 2:817185/1‑76 TGATTGCCTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTT > 1:1281906/1‑76 GATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTT > 2:1104189/1‑76 ATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTA < 1:1904439/76‑1 ATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTA < 1:1729749/76‑1 ATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTA > 2:1446314/1‑76 TTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTAT < 2:1845181/76‑1 TTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTAT > 1:460641/1‑76 TTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTAT > 1:1528412/1‑76 AATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTATGGTAATGAAGAAA < 2:1854964/76‑1 TGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTATGGTAATGAAGAAAAAACAAATGAAAT < 2:118712/76‑1 TCCCAAATCAATTCCTGTAATTTACGGCTATTTTTATGGTAAGGAAGAAAAAACAAATGAAATTGTAAAAAAACAT < 2:1330721/76‑1 TTTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAn < 1:291831/76‑2 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGGAGAAAAG < 1:1243911/76‑1 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAG < 2:332798/76‑1 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAG > 2:611937/1‑76 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAG < 1:228787/76‑1 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAG < 1:1659547/76‑1 TTATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACAACCGGGTTATGTCGTTGAGATTTTTGAAGAAAAG > 2:288243/1‑76 TATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAGA > 1:1504360/1‑76 ATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAGAT < 2:1000968/76‑1 ATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGA < 1:860029/70‑1 ATGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGA > 2:860029/1‑70 TGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAGATG < 1:1967416/76‑1 TTGATTGCTTAAGTTAAAATCATTGACATATGCAACCAACTTATCCCAAATCAATTCCTGTAATTTACGGCTATTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4459937‑4459858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatGGTAATGAAGAAAAAACAAATGAAATTGTAAAAAAACATCCGGGTTATGTCGTTGAGATTTTTGAAGAAAAGATG > REL606/4460139‑4460213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |