| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4459858 = | 179 (2.860) | 3 (0.050) | 3/140 | 6.8 | 1.9% | coding (1145/1653 nt) | yjgL | hypothetical protein |
| ? | REL606 | 4460139 = | 142 (2.430) | coding (1426/1653 nt) | yjgL | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 182 total aligned reads displayed.
CTAAAGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTAAGCAA > REL606/4459783‑4459933 | cTAAAGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCta < 1:720787/76‑1 (MQ=255) tAAAGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCtat < 1:1771550/76‑1 (MQ=255) tAAAGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCtat < 1:493081/76‑1 (MQ=255) aaaGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCtata > 2:700895/1‑76 (MQ=255) aaaGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCtata > 2:476556/1‑76 (MQ=255) aaGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATaa < 2:396322/76‑1 (MQ=255) gATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATaaaa < 1:79118/76‑1 (MQ=255) gATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATaaaa < 2:182937/76‑1 (MQ=255) ttttAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAAt < 2:1186165/76‑1 (MQ=255) ttttAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAAt > 1:1044997/1‑76 (MQ=255) tttAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATa < 1:1568935/76‑1 (MQ=255) ttAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAg > 2:779223/1‑76 (MQ=255) ttAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAg < 2:684950/76‑1 (MQ=255) tAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGc > 1:547084/1‑76 (MQ=255) tAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGc > 1:1827341/1‑76 (MQ=255) tAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGc < 1:1975826/76‑1 (MQ=255) gCTGCGATCAATCNAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCg > 1:1341960/1‑76 (MQ=255) cTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGt > 2:1879928/1‑76 (MQ=255) tGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTa < 1:1878533/76‑1 (MQ=255) gCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCTTATAAAAATAGCCGTaa < 2:864630/76‑1 (MQ=255) gCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTaa < 2:910305/76‑1 (MQ=255) gCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTaa < 1:312793/76‑1 (MQ=255) gCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTaa > 1:248584/1‑76 (MQ=255) cGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTaaa > 1:698522/1‑76 (MQ=255) gATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAAt < 2:600155/76‑1 (MQ=255) tCAATCTAAAATTAAAATAGCTGAGACCATATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTa > 1:1446604/1‑76 (MQ=255) cAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTAc < 1:1361409/76‑1 (MQ=255) tCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAgg > 1:1986426/1‑76 (MQ=255) tCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAgg > 2:596085/1‑76 (MQ=255) cTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGa < 2:1070068/76‑1 (MQ=255) cTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGa < 2:1044997/76‑1 (MQ=255) cTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGa > 1:552626/1‑76 (MQ=255) taaaattaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGaa > 1:1927127/1‑76 (MQ=255) aaaattaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAAt > 2:1366530/1‑76 (MQ=255) aaattaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAAtt > 1:1735000/1‑76 (MQ=255) aattaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTg < 1:982723/76‑1 (MQ=255) attaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGa < 2:271424/76‑1 (MQ=255) ttaaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGAt < 2:1104298/76‑1 (MQ=255) taaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGAtt > 1:193320/1‑76 (MQ=255) aaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGAttt > 2:629410/1‑76 (MQ=255) aaaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGAttt > 1:370542/1‑76 (MQ=255) aaatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTg > 2:1921837/1‑76 (MQ=255) aatAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAACAGCCGTAAATAACAGAAATTAATTTgg > 2:430941/1‑76 (MQ=255) tAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGa > 1:711153/1‑76 (MQ=255) gCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGGATTGATTTGGGATa < 1:1064762/76‑1 (MQ=255) gCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATa > 2:731668/1‑76 (MQ=255) cTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATaa > 1:841934/1‑76 (MQ=255) cTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATaa > 1:940909/1‑76 (MQ=255) tGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAg > 2:1070316/1‑76 (MQ=255) tGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAg < 2:1789015/76‑1 (MQ=255) tGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAg < 2:205935/76‑1 (MQ=255) tGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAg < 2:332969/76‑1 (MQ=255) gagaCCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgt > 2:817672/1‑76 (MQ=255) agaCCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgtt > 2:1299609/1‑76 (MQ=255) agaCCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgtt > 2:387309/1‑76 (MQ=255) ccTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgttggt > 1:315341/1‑76 (MQ=255) cTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgttggtt < 2:220684/76‑1 (MQ=255) ttATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgttggttg > 1:568697/1‑76 (MQ=255) ttATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgttggttg > 1:630867/1‑76 (MQ=255) tATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGc > 1:918301/1‑76 (MQ=255) tttttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCat < 2:1892661/76‑1 (MQ=255) tttttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCat < 2:1699746/76‑1 (MQ=255) ttttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCata > 1:462188/1‑76 (MQ=255) ttttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCata > 2:790273/1‑76 (MQ=255) tttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCatat < 1:1916527/76‑1 (MQ=255) tttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCatat < 2:1967452/76‑1 (MQ=255) tttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCatat > 2:1716543/1‑76 (MQ=255) tttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCatat < 2:185506/76‑1 (MQ=255) ttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAgttggtt < 1:1463408/69‑1 (MQ=255) ttCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATg < 1:1952003/76‑1 (MQ=255) cAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTc > 1:560263/1‑76 (MQ=255) cAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTc > 2:1262484/1‑76 (MQ=255) aaTCTCGATAAAGAACCCTATAACAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCa < 2:1006788/76‑1 (MQ=255) aaTCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCa < 2:349545/76‑1 (MQ=255) aTCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCaa > 1:1237456/1‑76 (MQ=255) aTCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCaa < 1:154340/76‑1 (MQ=255) ctcGATAAAGAACCCTATAAAAATAGCCTTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATg > 1:547166/1‑76 (MQ=255) ctcGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATg < 2:1250040/76‑1 (MQ=255) ctcGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATg < 1:1370516/76‑1 (MQ=255) tcGATAAAGAACCCTATAAAAATCGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGa > 1:1970290/1‑76 (MQ=255) ngATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGAt > 1:1161237/2‑76 (MQ=255) cGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGAt > 1:143298/1‑76 (MQ=255) cGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGAt > 1:1305913/1‑76 (MQ=255) aTAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGAttt > 1:257061/1‑76 (MQ=255) aTAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGAttt > 2:506772/1‑76 (MQ=255) aaaGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTa > 1:1984521/1‑76 (MQ=255) aaaGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTa < 1:949388/76‑1 (MQ=255) aaaGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTa < 2:1988534/76‑1 (MQ=255) aaaGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTa > 2:1529677/1‑76 (MQ=255) aGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAAc < 2:443154/76‑1 (MQ=255) aGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAAc < 2:324856/76‑1 (MQ=255) aCCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTa < 1:1016639/76‑1 (MQ=255) aCCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTa < 2:746164/76‑1 (MQ=255) aCCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTa > 2:1538756/1‑76 (MQ=255) aCCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTa > 1:100864/1‑76 (MQ=255) cccTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTaa < 1:1706010/76‑1 (MQ=255) ccTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTaan < 1:397309/76‑2 (MQ=255) ccTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTAAg < 2:984680/76‑1 (MQ=255) cTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTAAGc < 1:994184/76‑1 (MQ=255) ataAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTAAGCaa < 1:1528412/76‑1 (MQ=255) | CTAAAGATTTTAGCTGCGATCAATCTAAAATTAAAATAGCTGAGACCTTATTTTTCAATCTCGATAAAGAACCCTATAAAAATAGCCGTAAATTACAGGAATTGATTTGGGATAAGTTGGTTGCATATGTCAATGATTTTAACTTAAGCAA > REL606/4459783‑4459933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |