| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041054 = | 106 (1.880) | 56 (1.090) | 34/136 | 0.5 | 28.1% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 191 (3.730) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
Only 100 of 175 total aligned reads displayed.
TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040979‑2041128 | gtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAatat > 2:1524035/1‑76 (MQ=255) gtTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAatat < 2:182237/76‑1 (MQ=255) ttctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccAtt > 1:77243‑M1/74‑76 (MQ=255) ttctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccAtt < 1:1761644‑M1/3‑1 (MQ=255) tctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATta > 2:1797004‑M1/73‑76 (MQ=255) tGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtatta < 1:692995/76‑1 (MQ=255) gAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAAtattat < 1:1614088/76‑1 (MQ=255) ctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATtat < 1:1205484‑M1/5‑1 (MQ=255) ctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATtat > 1:1705109‑M1/72‑76 (MQ=255) ctaactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATtat > 1:868900‑M1/72‑76 (MQ=255) taactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATtata < 2:1340131‑M1/6‑1 (MQ=255) gTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTTATCAATATTatat < 1:1206876/76‑1 (MQ=255) gTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTatat < 1:453962/76‑1 (MQ=255) gTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTatat < 1:173605/76‑1 (MQ=255) aactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATTatat < 2:1200106‑M1/7‑1 (MQ=255) aactatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATTatat < 2:1449750‑M1/7‑1 (MQ=255) tAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATc < 1:95211/76‑1 (MQ=255) ctatattataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATTATATcc < 2:72611‑M1/9‑1 (MQ=255) aGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATcc > 1:795082/1‑76 (MQ=255) cAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcat < 1:717054/76‑1 (MQ=255) tGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcatcat > 1:1525617/1‑76 (MQ=255) tGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCcatcat < 1:1397706/76‑1 (MQ=255) tcgaGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCAttt > 2:782929/4‑76 (MQ=255) ataaatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCAttt < 2:1804744‑M1/16‑1 (MQ=255) aatgaaataagtatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCa < 2:1101726‑M1/19‑1 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat < 1:13257/76‑1 (MQ=255) aaaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAatat < 1:520878/76‑1 (MQ=255) aataagtatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATc < 2:877417‑M1/24‑1 (MQ=255) aataagtatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATc < 2:190739‑M1/24‑1 (MQ=255) aaaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATc > 1:832971/1‑76 (MQ=255) aaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATca < 1:588712/76‑1 (MQ=255) aaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATca < 2:373139/76‑1 (MQ=255) aaTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATca < 1:500709/76‑1 (MQ=255) taagtatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATcaa < 2:1667354‑M1/26‑1 (MQ=255) aTTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaa < 1:517422/76‑1 (MQ=255) atgtGAATTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATcaaca > 2:1589563/4‑76 (MQ=255) tatggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACaaa < 2:961005‑M1/30‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTATTCAATATTATATCCATCATTTTCAATATCAACaaa < 2:1626769/76‑1 (MQ=255) cTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACaaa < 1:224075/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:1015329/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg < 1:1569981/76‑1 (MQ=255) tGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAg > 2:1753873/1‑76 (MQ=255) atggaacctttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAg < 2:838199‑M1/31‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:185423/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:901644/76‑1 (MQ=255) aaGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGAc < 1:1719790/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGCCa < 1:1139207/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:312388/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:1591277/76‑1 (MQ=255) aGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACa < 1:198848/76‑1 (MQ=255) gTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAg < 1:589158/76‑1 (MQ=255) gTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAg < 1:1742378/76‑1 (MQ=255) aacctttattaaatataatatttactattttattaaatgccATTATATACATCATTTTCAATATCAACAaagatag < 2:277053‑M1/35‑4 (MQ=255) tttattaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGt < 2:48410‑M1/39‑1 (MQ=255) tGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTa > 2:470648/1‑76 (MQ=255) ggTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTaa < 2:1138372/76‑1 (MQ=255) ttaaatataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt < 2:218598‑M1/43‑1 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt < 2:650959/76‑1 (MQ=255) tgtAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGt > 1:58395/1‑76 (MQ=255) atataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAagtccgt < 2:1306079‑M1/47‑3 (MQ=255) atataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat < 2:1306059‑M1/47‑1 (MQ=255) atataatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat < 2:1642073‑M1/47‑1 (MQ=255) aTAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccat > 2:949381/1‑76 (MQ=255) tAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccatt < 1:1818044/76‑1 (MQ=255) taatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcc < 2:246412‑M1/50‑1 (MQ=255) taatatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattcc < 2:684023‑M1/50‑1 (MQ=255) gCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGGGTAAGtccattcc > 1:461727/1‑76 (MQ=255) atatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat < 2:520341‑M1/52‑1 (MQ=255) atatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGtccattccat < 2:520326‑M1/52‑1 (MQ=255) tatttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATa < 2:784795‑M1/53‑1 (MQ=255) atttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa < 2:1776748‑M1/54‑1 (MQ=255) atttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaa < 2:61950‑M1/54‑1 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 1:1449062/1‑76 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 2:1700994/1‑76 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa > 1:103379/1‑76 (MQ=255) ttCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaa < 1:1140580/76‑1 (MQ=255) ttactattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa < 2:1742044‑M1/56‑1 (MQ=255) tCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATaaaa > 1:472089/1‑76 (MQ=255) cTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAAt < 1:412200/76‑1 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa > 2:1447991/1‑76 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa > 1:127835/1‑76 (MQ=255) tATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATa > 1:1050212/1‑76 (MQ=255) tattttattaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGc < 2:1472767‑M1/60‑1 (MQ=255) tttattaaatgcaATTATATCCATCATTTTCAATATCAAAAAAGAAAGGCGTAAGTACATTCCATAAAATAGAAtg < 2:870122‑M1/63‑1 (MQ=255) ttCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtg > 1:442770/1‑76 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCAtgtg < 1:1488458/76‑1 (MQ=255) cTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCANAAAATAGCAtgtg < 1:1233727/76‑1 (MQ=255) attaaatgccATTATATCCATCATTTTCAATATCAACAAACACAGGCGTAAGTCCATTCCATAAAATAGCATGTGa < 2:697080‑M1/66‑1 (MQ=255) ttaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGaa < 2:186734‑M1/67‑1 (MQ=255) ttaaatgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGaa < 2:1091539‑M1/67‑1 (MQ=255) gTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGaa > 1:1810305/1‑76 (MQ=255) tAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAg < 1:1067564/76‑1 (MQ=255) aaTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGt > 1:219510/1‑76 (MQ=255) aaTCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGt > 2:100678/1‑76 (MQ=255) tCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTg < 1:1170116/76‑1 (MQ=255) atgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTg < 2:1376626‑M1/71‑1 (MQ=255) tgccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGc < 2:88269‑M1/72‑1 (MQ=255) gccATTATATCCATCATTTTCAAAATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGca < 2:775104‑M1/73‑1 (MQ=255) ccATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaa < 2:1494659‑M1/74‑1 (MQ=255) tattatATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGcaac < 1:918942/76‑1 (MQ=255) | TGTTGAGTAGCAATGGACAGGTAAAATTGCTGAAGTTTTTGGTGTAATAGCCTGTTCTATTTTTCTGTAATCAATATTATATCCATCATTTTCAATATCAACAAAGACAGGCGTAAGTCCATTCCATAAAATAGCATGTGAAGTTGCAAC > REL606/2040979‑2041128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |