| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,147,765 | Δ27 bp | [ygjF] | [ygjF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3147765 | 3147791 | 27 | 33 [0] | [0] 33 | [ygjF] | [ygjF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147764 | 0 (0.000) | 30 (0.800) | 25/142 | 0.5 | 100% | intergenic (+59/+20) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147792 = | 0 (0.000) | coding (499/507 nt) | ygjF | G/U mismatch‑specific DNA glycosylase | |||||
CGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147685‑3147764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCG > REL606/3147792‑3147865 CGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCA‑CCGGCACTAGGCCCTCTGCACAAAC < 2:542632/76‑1 TAGCTTCCTGTACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACG < 2:887054/76‑1 TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCA < 1:129757/76‑1 GACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACT < 2:880016/76‑1 CGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTAC > 1:1131661/1‑76 CGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTAC > 1:19584/1‑76 AATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCG < 1:126842/76‑1 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCGCTGCACAAACGCCCACGCACTACCCGCGC > 1:979284/1‑76 AGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTC < 1:597279/76‑1 CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAG > 1:325887/1‑76 CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGC > 1:154970/1‑76 ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCG < 1:221518/76‑1 ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCG < 1:335388/76‑1 ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCG > 1:521037/1‑76 TCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAGACCGACGCACTAGCAGCGGCTGGTCCAGCTagt > 2:77451/1‑73 CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCG > 1:1124021/1‑76 CAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCG < 1:358322/76‑1 AGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGA > 2:1082587/1‑76 GTTACGCCGCCCCCGGCACTAGCGCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACG < 1:549/76‑1 GTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACG < 1:472022/76‑1 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCT < 1:898864/76‑1 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCT > 2:493570/1‑76 TACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCCCCCGATACGCT > 1:56854/1‑76 ACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTT < 1:1159835/76‑1 CGCCGCACCCGGCACTAGGCCCTCTGCACAAACTCCCCCGCACTATCAGCGCCTGCTCCAGCGCGCGGTATGCTTC > 2:578069/1‑76 GCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCA < 1:452974/76‑1 CCGCACCCGGCACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAA > 2:1039886/1‑76 CACTAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTC < 2:1188778/76‑1 TAGGCCCTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAG < 2:459786/76‑1 CTCTGCACAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCACGATACGCTTCAACCAGTTTCTCCAGTGAAAC > 1:101773/1‑76 CAAACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTT > 2:376459/1‑76 AACGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAA > 2:730630/1‑76 CGCCCCCGCCCTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAAC < 2:101773/76‑1 GCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACC > 1:1244509/1‑76 CCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCG > 1:652491/1‑76 CGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3147685‑3147764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCG > REL606/3147792‑3147865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |