| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,147,765 | Δ27 bp | [ygjF] | [ygjF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3147765 | 3147791 | 27 | 33 [0] | [0] 33 | [ygjF] | [ygjF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147764 | 0 (0.000) | 30 (0.800) | 25/142 | 0.5 | 100% | intergenic (+59/+20) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147792 = | 0 (0.000) | coding (499/507 nt) | ygjF | G/U mismatch‑specific DNA glycosylase | |||||
TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGT > REL606/3147691‑3147838 | ttCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCca < 1:129757‑M1/76‑3 (MQ=255) gACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcact < 2:880016‑M1/76‑9 (MQ=255) cGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactac > 1:1131661‑M1/1‑66 (MQ=255) cGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactac > 1:19584‑M1/1‑66 (MQ=255) aaTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcg < 1:126842‑M1/76‑16 (MQ=255) aTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCGCTGCACAAACGCCcacgcactacccgcgc > 1:979284‑M1/1‑60 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtc < 1:597279‑M1/76‑23 (MQ=255) ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccag > 1:325887‑M1/1‑51 (MQ=255) cGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagc > 1:154970‑M1/1‑50 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcg < 1:221518‑M1/76‑30 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcg < 1:335388‑M1/76‑30 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcg > 1:521037‑M1/1‑47 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAGACCgacgcactagcagcggctggtccagctagt > 2:77451‑M1/1‑46 (MQ=255) cAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcg > 1:1124021‑M1/1‑45 (MQ=255) cAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcg < 1:358322‑M1/76‑32 (MQ=255) aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcga > 2:1082587‑M1/1‑44 (MQ=255) gTTACGCCGCCCCCGGCACTAGCGCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacg < 1:549‑M1/76‑37 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacg < 1:472022‑M1/76‑37 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgct < 1:898864‑M1/76‑39 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgct > 2:493570‑M1/1‑38 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagcccccgatacgct > 1:56854‑M1/1‑38 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgctt < 1:1159835‑M1/76‑40 (MQ=255) cgccgcACCCGGCACTAGGCCCTCTGCACAAACTCCcccgcactatcagcgcctgctccagcgcgcggtatgcttc > 2:578069‑M1/1‑36 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgcttca < 1:452974‑M1/76‑42 (MQ=255) ccgcACCCGGCACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaa > 2:1039886‑M1/1‑34 (MQ=255) cACTAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctc < 2:1188778‑M1/76‑53 (MQ=255) tAGGCCCTCTGCACAAACGCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccag < 2:459786‑M1/76‑56 (MQ=255) ctctGCACAAACGCCcacgcactaccagcgcctggtccagctcacgatacgcttcaaccagtttctccagtgaaac > 1:101773‑M1/1‑15 (MQ=255) caAACGCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgactt > 2:376459‑M1/1‑8 (MQ=255) aaCGCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaa > 2:730630‑M1/1‑6 (MQ=255) cGCCcccgccctaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaaac < 2:101773‑M1/76‑73 (MQ=255) gCCcacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaaacc > 1:1244509‑M1/1‑3 (MQ=255) cccacgcactaccagcgcctggtccagctcgcgatacgcttcaaccagtttctccagtgaaacgcgacttaaaccg > 1:652491‑M1/1‑2 (MQ=255) | TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGT > REL606/3147691‑3147838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |