| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,147,765 | Δ27 bp | [ygjF] | [ygjF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3147765 | 3147791 | 27 | 33 [0] | [0] 33 | [ygjF] | [ygjF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3147764 | 0 (0.000) | 30 (0.800) | 25/142 | 0.5 | 100% | intergenic (+59/+20) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 | 3147792 = | 0 (0.000) | coding (499/507 nt) | ygjF | G/U mismatch‑specific DNA glycosylase | |||||
ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCG > REL606/3147718‑3147865 | ttcctggacgattaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCa < 1:129757‑M2/2‑1 (MQ=255) gacgattaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACt < 2:880016‑M2/8‑1 (MQ=255) cgattaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTAc > 1:1131661‑M2/67‑76 (MQ=255) cgattaatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTAc > 1:19584‑M2/67‑76 (MQ=255) aatcggtaggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAgcg < 1:126842‑M2/15‑1 (MQ=255) atcggtaggccggatcaggcgttacgccgcacccggcactaggcccgctgcacaaacgccCACGCACTACCCgcgc > 1:979284‑M2/61‑76 (MQ=255) aggccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTc < 1:597279‑M2/22‑1 (MQ=255) ccggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAg > 1:325887‑M2/52‑76 (MQ=255) cggatcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGc > 1:154970‑M2/51‑76 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTcg < 1:221518‑M2/29‑1 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTcg < 1:335388‑M2/29‑1 (MQ=255) atcaggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTcg > 1:521037‑M2/48‑76 (MQ=255) tcaggcgttacgccgcacccggcactaggccctctgcacaaagaccGACGCACTAGCAGCGGCTGGTCCagctagt > 2:77451‑M2/47‑73 (MQ=255) caggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTcgcg > 1:1124021‑M2/46‑76 (MQ=255) caggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTcgcg < 1:358322‑M2/31‑1 (MQ=255) aggcgttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGa > 2:1082587‑M2/45‑76 (MQ=255) gttacgccgcccccggcactagcgcctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg < 1:549‑M2/36‑1 (MQ=255) gttacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg < 1:472022‑M2/36‑1 (MQ=255) tacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt < 1:898864‑M2/38‑1 (MQ=255) tacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt > 2:493570‑M2/39‑76 (MQ=255) tacgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCCCCCGATACGCt > 1:56854‑M2/39‑76 (MQ=255) acgccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCtt < 1:1159835‑M2/39‑1 (MQ=255) cgccgcacccggcactaggccctctgcacaaactccCCCGCACTATCAGCGCCTGCTCCAGCGCGCGGTATGCTTc > 2:578069‑M2/37‑76 (MQ=255) gccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 1:452974‑M2/41‑1 (MQ=255) ccgcacccggcactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCaa > 2:1039886‑M2/35‑76 (MQ=255) cactaggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTtctc < 2:1188778‑M2/52‑1 (MQ=255) taggccctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAg < 2:459786‑M2/55‑1 (MQ=255) ctctgcacaaacgccCACGCACTACCAGCGCCTGGTCCAGCTCACGATACGCTTCAACCAGTTTCTCCAGTGAAAc > 1:101773‑M2/16‑76 (MQ=255) caaacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACtt > 2:376459‑M2/9‑76 (MQ=255) aacgccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTaa > 2:730630‑M2/7‑76 (MQ=255) cgccCCCGCCCTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAAc < 2:101773‑M2/72‑1 (MQ=255) gccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAAcc > 1:1244509‑M2/4‑76 (MQ=255) ccCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCg > 1:652491‑M2/3‑76 (MQ=255) | ATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTGAAACGCGACTTAAACCG > REL606/3147718‑3147865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |