New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 3737261	48 (2.170)	4 (0.190)	3/142	2.7	8.8%	coding (566/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
	?	REL606	= 3737695	37 (1.770)					coding (132/1254 nt)	waaL	Lipid A‑core, surface polymer ligase
Rejected: Frequency below/above cutoff threshold.

TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3737185‑3737261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTC  <  REL606/3737695‑3737629                                                                                                                                                  TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTA                                                                      <  1:92120/76‑1                                                   AGTTAATTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAAT                    >  2:142068/1‑76                                                         TTGTATATAATGTTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACT              >  2:365111/1‑76                                                                     TTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTC  >  2:608607/1‑76                                                                     TTGTTTTATATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTC  >  2:608613/1‑76                                                                                                                                                  TATGGCTGCACGCGTTTCAGTTACTATGACAGCACATAAGCTAAGCATGAAGTTAATTGTATATAATGTTGTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/3737185‑3737261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatATCTGCATTGTATTTTCTAATGACACCAAAAAAAACAATAACTAATAATCCTACTTTGTTAATTTTC  <  REL606/3737695‑3737629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.