| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3737261 | 48 (2.170) | 4 (0.190) | 3/142 | 2.7 | 8.8% | coding (566/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737695 | 37 (1.770) | coding (132/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACAT > REL606/3737625‑3737770 | agaTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAAt > 1:547388/1‑76 (MQ=255) gaTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAAtt < 1:84046/76‑1 (MQ=255) aTGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTc < 1:685506/76‑1 (MQ=255) tGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTcc < 1:611622/76‑1 (MQ=255) gAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATataaaacaa > 2:608613‑M2/1‑67 (MQ=255) gAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATataaaacaa > 2:608607‑M2/1‑67 (MQ=255) aaTTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCt < 1:154221/76‑1 (MQ=255) tAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCa > 1:325446/1‑76 (MQ=255) cAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATga > 2:53509/1‑76 (MQ=255) aaaGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaa > 1:696397/1‑76 (MQ=255) aaGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaag < 2:538830/76‑1 (MQ=255) aGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATataaaacaacattatatacaa > 2:365111‑M2/1‑55 (MQ=255) gTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATgaagaa > 2:313176/1‑76 (MQ=255) tAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGaaa > 1:490907/1‑76 (MQ=255) aGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAAc > 2:375581/1‑76 (MQ=255) gATTATTAGTTATTGTTTTTTTTGGTGTCCTTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACtt > 1:74135/1‑76 (MQ=255) attattAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATataaaacaacattatatacaattaact > 2:142068‑M2/1‑49 (MQ=255) tGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAAcatca > 2:27634/1‑76 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc < 2:155413/76‑1 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc < 1:9035/76‑1 (MQ=255) ttttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATccc > 1:698461/1‑76 (MQ=255) tttttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCa > 1:347492/1‑76 (MQ=255) tttGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATa < 1:366454/76‑1 (MQ=255) tgtCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGAc < 1:346118/76‑1 (MQ=255) tCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACaa > 1:576032/1‑76 (MQ=255) ttAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGt > 1:676816/1‑76 (MQ=255) ttAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGt > 1:676812/1‑76 (MQ=255) aaaaTACAATGCAGATATAATTCCAGCTGCTTGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcatc < 1:328518/76‑1 (MQ=255) aaaaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcatc > 2:516278/1‑76 (MQ=255) aaaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcatca > 2:605505/1‑76 (MQ=255) aaaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGtcatca > 2:577653/1‑76 (MQ=255) aaTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaa > 2:520830/1‑76 (MQ=255) aTACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCaaa > 2:133107/1‑76 (MQ=255) tACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAg > 1:35120/1‑76 (MQ=255) aCAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGa < 2:708536/76‑1 (MQ=255) aaTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaa > 1:332348/1‑76 (MQ=255) aaTGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGaaa > 1:332340/1‑76 (MQ=255) cAGATATAATTCCNGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAAt > 1:484503/1‑76 (MQ=255) gATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATAc < 1:23678/76‑1 (MQ=255) tataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACat > 1:333650/1‑76 (MQ=255) tataATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACat > 1:333641/1‑76 (MQ=255) | AGATGAAAATTAACAAAGTAGGATTATTAGTTATTGTTTTTTTTGGTGTCATTAGAAAATACAATGCAGATATAATTCCAGCTGCATGAAGAAACTTTGTTGCAACATCATCCCATAAAGACAAAGTCATCAAAGAAAAAATACAT > REL606/3737625‑3737770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |