| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 883,665 | IS1 (–) +9 bp | [mdfA] | [mdfA] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 56 (0.880) | 39/208 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 883665 = | 0 (0.000) | intergenic (‑277/‑8) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 883673 | 0 (0.000) | 84 (1.320) | 51/208 | 0.1 | 100% | coding (1/1233 nt) | mdfA | multidrug efflux system protein |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
Only 100 of 145 total aligned reads displayed.
AGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGG > NC_000913/883528‑883802 | gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGa > 1:1296874‑M2/138‑139 (MQ=255) aaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtg > 1:58018/1‑139 (MQ=255) aaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATtg < 1:198806/139‑1 (MQ=255) cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCaaaa > 2:255688‑M2/124‑139 (MQ=255) gaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc < 1:381708‑M1/139‑13 (MQ=255) gaaagCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc < 2:58018‑M1/139‑13 (MQ=255) ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGc < 1:169720‑M2/25‑1 (MQ=255) acgcaccacccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTc < 2:431701‑M2/28‑1 (MQ=255) ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGcc > 2:776164‑M2/105‑139 (MQ=255) cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAgg > 1:1468516‑M2/102‑139 (MQ=255) gTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt > 1:176146‑M1/1‑109 (MQ=255) tGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgact > 1:756027‑M1/1‑102 (MQ=255) gTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttca > 1:319496‑M1/1‑101 (MQ=255) gTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaat > 1:1605728‑M1/1‑101 (MQ=255) aaTGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataa < 2:319496‑M1/139‑44 (MQ=255) aaTGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataa > 2:1110021‑M1/1‑96 (MQ=255) aaTGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataa < 1:1110021‑M1/139‑44 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg < 2:1468516‑M2/53‑1 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg > 1:507857‑M2/85‑95 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg < 2:507857‑M2/11‑1 (MQ=255) tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttta > 2:358653‑M1/1‑92 (MQ=255) tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttta < 1:358653‑M1/124‑33 (MQ=255) tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt > 2:1029822‑M1/1‑92 (MQ=255) tgCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt < 1:1029822‑M1/122‑31 (MQ=255) cTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat < 1:1190379‑M1/113‑24 (MQ=255) cTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat > 2:1190379‑M1/1‑90 (MQ=255) acagctgatagaaacagaagccactggagcacttcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg < 2:1492345‑M2/11‑1 (MQ=255) acagctgatagaaacagaagccactggagcacttcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATtgcatg > 1:1492345‑M2/80‑90 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACttt > 1:372988‑M2/80‑139 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt > 2:209105‑M2/79‑139 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTc > 1:668117‑M2/75‑122 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTc < 2:668117‑M2/48‑1 (MQ=255) tGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa > 1:268285‑M1/1‑82 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct < 1:209105‑M2/67‑1 (MQ=255) gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt < 2:485536‑M1/116‑37 (MQ=255) gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgtttt > 1:1027072‑M1/1‑80 (MQ=255) gTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt < 2:367078‑M1/110‑31 (MQ=255) ttCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca < 2:1183043‑M1/139‑62 (MQ=255) aGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 2:102387‑M1/1‑75 (MQ=255) gCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacctattgatagtgttttatgttcagataatgcc > 1:50394‑M1/1‑74 (MQ=255) gCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacctattgatagtgttttatgttcagataatgcc < 2:50394‑M1/121‑48 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACtttt < 1:413920‑M2/61‑1 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct > 2:162046‑M2/66‑132 (MQ=255) cTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag < 1:1084409‑M1/139‑67 (MQ=255) tACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc < 2:176146‑M1/139‑68 (MQ=255) aCAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccg > 1:290266‑M1/1‑71 (MQ=255) aCAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccg < 2:290266‑M1/120‑50 (MQ=255) cAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttc > 1:333472‑M1/1‑70 (MQ=255) ggagcacctcaaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGa < 1:776164‑M2/85‑1 (MQ=255) tctcGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgata < 2:1283739‑M1/82‑25 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccg < 1:1516815‑M2/1‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccg > 2:1516815‑M2/49‑49 (MQ=255) caaaaacaccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAAc < 1:917770‑M2/94‑1 (MQ=255) tGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc > 1:800333‑M1/1‑48 (MQ=255) tGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc < 2:800333‑M1/60‑13 (MQ=255) cgcTTTTATTAAACTCTGCGCGATTATTATTGGCgaagaa < 2:1313462/40‑1 (MQ=255) cgcTTTTATTAAACTCTGCGCGATTATTATTGGCgaagaa > 1:1313462/1‑40 (MQ=255) cgcTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgact > 2:1576265‑M1/1‑46 (MQ=255) cgcTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgact < 1:1576265‑M1/56‑11 (MQ=255) ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct < 1:741971‑M2/67‑1 (MQ=255) ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCctct > 2:741971‑M2/38‑104 (MQ=255) ccatcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCg > 2:654947‑M2/38‑139 (MQ=255) cTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgact < 2:1108253‑M1/139‑96 (MQ=255) cTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca > 2:1067853‑M1/1‑44 (MQ=255) tcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCa > 2:894826‑M2/35‑139 (MQ=255) tcatacattaaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCa > 1:1468380‑M2/35‑139 (MQ=255) ttattaAACTCTGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc > 2:1325067‑M1/1‑41 (MQ=255) taaatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATg > 2:1035217‑M2/27‑139 (MQ=255) ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa < 1:1415902‑M1/47‑15 (MQ=255) ctctGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaa > 2:1415902‑M1/1‑33 (MQ=255) aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCa < 1:1153391‑M2/49‑1 (MQ=255) aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCa > 2:1153391‑M2/25‑73 (MQ=255) aatcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGAt > 2:450577‑M2/25‑139 (MQ=255) atcagtaagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGat > 2:304466‑M2/24‑133 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc < 2:1008876‑M1/137‑108 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc > 1:1008876‑M1/1‑30 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc < 2:931062‑M1/136‑107 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc > 1:931062‑M1/1‑30 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaatgactcc > 2:398616‑M1/1‑30 (MQ=255) tGCGCGATTATTATTGGCGAAGAAATTGCAggtaa < 1:667411‑M1/35‑6 (MQ=255) tGCGCGATTATTAATGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt > 2:1072028‑M1/1‑30 (MQ=255) tGCGCGATTATTAATGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgtt < 1:1072028‑M1/66‑37 (MQ=255) gcgcGATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttatcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg > 2:1459444‑M1/1‑29 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt > 2:1206127‑M1/1‑28 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagtgttt < 1:1206127‑M1/58‑31 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagt < 2:1364081‑M1/54‑27 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgatagt > 1:1364081‑M1/1‑28 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactccaacttattgat > 1:986802‑M1/1‑28 (MQ=255) cgcgATTATTATTGGCGAAGAAATTGCAggtaatgactcc < 1:470141‑M1/40‑13 (MQ=255) taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCtat > 2:404437‑M2/19‑116 (MQ=255) taagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCtat < 1:404437‑M2/98‑1 (MQ=255) aagttggcagcatcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAAccc < 1:450577‑M2/122‑1 (MQ=255) atcaccGAAATTGCCTGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg < 1:1144392‑M2/53‑1 (MQ=255) atcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc > 1:1595610‑M2/7‑40 (MQ=255) atcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc < 2:1595610‑M2/34‑1 (MQ=255) atcaccGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCg > 2:1144392‑M2/7‑59 (MQ=255) cGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc < 2:1255132‑M2/34‑1 (MQ=255) cGAAATTGCATGCAAAATAAATTAGCTTCCGGTGc > 1:1255132‑M2/2‑35 (MQ=255) cGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTgg < 2:1468380‑M2/138‑1 (MQ=255) agaaATTGCAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt > 1:1122760‑M1/1‑10 (MQ=255) | AGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCATGCAAAATAAATTAGCTTCCGGTGCCAGGCTTGGACGTCAGGCGTTACTTTTCCCTCTCTGTCTGGTGCTTTACGAATTTTCAACCTATATCGGCAACGATATGATTCAACCCGGTATGTTGGCCGTGG > NC_000913/883528‑883802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |