| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 883,665 | IS1 (–) +9 bp | [mdfA] | [mdfA] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 56 (0.880) | 39/208 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 883665 = | 0 (0.000) | intergenic (‑277/‑8) | ybjG/mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein | |||||
| * | ? | NC_000913 | = 883673 | 0 (0.000) | 84 (1.320) | 51/208 | 0.1 | 100% | coding (1/1233 nt) | mdfA | multidrug efflux system protein |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
Only 100 of 214 total aligned reads displayed.
GTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTAT > NC_000913/1050407‑1050683 | gTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTAcc < 1:217382/139‑1 (MQ=31) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:956286/1‑139 (MQ=35) caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacct < 2:1476068‑M1/139‑23 (MQ=255) caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg > 2:682868/1‑126 (MQ=34) caCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg < 1:682868/126‑1 (MQ=34) gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctt < 1:387376‑M1/139‑29 (MQ=255) cGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcag > 1:421321‑M2/1‑108 (MQ=255) gCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATACGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgca > 1:931062‑M2/1‑106 (MQ=255) gCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatc > 2:1435440‑M1/1‑106 (MQ=255) gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt < 2:1403224/117‑1 (MQ=255) gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt > 1:1403224/1‑117 (MQ=255) gAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttga < 1:1180778‑M1/107‑11 (MQ=255) gAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttga > 2:1180778‑M1/1‑97 (MQ=255) cGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattcc > 1:1011100‑M1/1‑86 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt > 1:595892/1‑118 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt < 2:595892/118‑1 (MQ=255) ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaa > 1:1160962/1‑139 (MQ=255) ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaa < 1:927994/139‑1 (MQ=255) aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc > 2:156912/1‑139 (MQ=255) tCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTccc < 2:467603/139‑1 (MQ=255) tGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAt > 1:1148220/1‑98 (MQ=255) tGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt < 1:1008575/108‑1 (MQ=255) tGGAGCTGCATGACAAAATCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt > 2:1008575/1‑108 (MQ=255) cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtag < 1:1084409‑M2/139‑74 (MQ=255) gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagct > 2:102387‑M2/1‑64 (MQ=255) gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgc < 2:1011100‑M1/139‑76 (MQ=255) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaag < 1:1067853‑M2/105‑45 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggca < 1:1080721‑M1/139‑81 (MQ=255) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggca < 2:5424‑M1/139‑81 (MQ=255) aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaacca < 2:1143018‑M1/70‑15 (MQ=255) aaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgac < 2:966779‑M1/59‑4 (MQ=255) tCATCGGGCATTATCTGATCATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggt > 2:1084409‑M2/1‑53 (MQ=255) cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgt > 1:290266‑M2/1‑49 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATAc > 2:88887/1‑139 (MQ=255) ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacatt < 1:1110021‑M2/139‑97 (MQ=255) ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacatt > 2:1110021‑M2/1‑43 (MQ=255) ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgc < 2:930599‑M1/118‑76 (MQ=255) tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacattcttac > 1:319496‑M2/1‑38 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttg < 2:333472‑M2/107‑71 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttg > 1:333472‑M2/1‑37 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCg > 2:759357/1‑132 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCg < 1:759357/132‑1 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccattaataatcgcgca > 2:1072028‑M2/1‑36 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaac > 1:485536‑M2/1‑36 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacat > 2:238286‑M1/1‑36 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttg > 1:833342‑M1/1‑36 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttg < 2:833342‑M1/73‑38 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt < 2:1333793/73‑1 (MQ=255) cATAAAACACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacatta < 1:1435440‑M1/139‑106 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagca > 2:358653‑M2/1‑32 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagca < 1:358653‑M2/124‑93 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa > 1:693973/1‑71 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 2:693973/71‑1 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaac > 1:1027072‑M2/1‑31 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcag < 2:1355850‑M2/62‑32 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcag > 1:1355850‑M2/1‑31 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgaca > 2:935180‑M1/1‑31 (MQ=255) aaaCACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacattcttacattatt > 2:811881‑M2/1‑30 (MQ=255) aaaCACTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagca > 2:1029822‑M2/1‑30 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc > 2:586375/1‑107 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc < 1:586375/107‑1 (MQ=255) acTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcg > 1:1364081‑M2/1‑26 (MQ=255) acTATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcg < 2:1364081‑M2/54‑29 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCa > 2:495327/1‑138 (MQ=255) tATCAGTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTg < 1:1136437/117‑1 (MQ=255) tATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacattcttacattattacgagtat < 2:1250710‑M2/139‑116 (MQ=255) tATCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgaga > 1:1283739‑M2/1‑24 (MQ=255) tATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag < 2:1102839/43‑1 (MQ=255) aTCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaag < 1:1190379‑M2/113‑91 (MQ=255) aTCAATAAGTTGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaag > 2:1190379‑M2/1‑23 (MQ=255) aTCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTg > 2:182280/1‑61 (MQ=255) aTCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTg < 1:182280/61‑1 (MQ=255) tCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAggg < 1:88887/139‑1 (MQ=255) aTAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacattactgcatgaggcac < 2:1209285‑M1/137‑119 (MQ=255) aTAAGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacattactgcatgaggcac > 1:1209285‑M1/1‑19 (MQ=255) aaGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacatta < 2:145460‑M1/122‑106 (MQ=255) aaGTTGGAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacatta > 1:145460‑M1/1‑17 (MQ=255) aaGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaaa < 2:11557/75‑1 (MQ=255) ttGGAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaacca < 2:268285‑M2/96‑83 (MQ=255) ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt > 2:572157/1‑49 (MQ=255) ggAGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgca > 1:800333‑M2/1‑12 (MQ=255) ggAGTCATTACCtgcaatttcttcgccaataataatcgcgca > 2:398616‑M2/1‑12 (MQ=255) ggAGTCATTACCtgcaatttcttcgccaataataatcgcg < 1:470141‑M2/40‑29 (MQ=255) ggAGTCATTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacattactgcatgaggcaccaatataag > 1:516671‑M1/1‑12 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt > 1:1518538/1‑49 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACttt < 2:1518538/49‑1 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGc > 1:266898/1‑90 (MQ=255) ggAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGa > 1:552619/1‑139 (MQ=255) aGTCATTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcg < 1:1576265‑M2/56‑47 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCtt < 2:479011/90‑1 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGAtt > 1:496809/1‑139 (MQ=255) cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGtt < 1:454932/139‑1 (MQ=255) aTTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacattcttacattattacgagtatagctacgctttctttaag < 1:1101927‑M2/139‑134 (MQ=255) aTTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctgaaaccacggttaagcacattcttac < 2:1605728‑M2/107‑102 (MQ=255) aTTACCtgcaatttcttcgccaataataatcgcgcagagtttaataaaagcgcagctaacgagaaagcgaattttgtagctga < 1:57099‑M2/83‑78 (MQ=255) aTTACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgaca > 2:1161375‑M1/1‑6 (MQ=255) ttACCtgcaatttcttcgccaataataatcgcgca > 2:667411‑M2/1‑5 (MQ=255) ttACCtgcaatttcttcgccaataataatcgcgca < 1:667411‑M2/35‑31 (MQ=255) ttACCgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgccc > 2:303996‑M1/1‑5 (MQ=255) cgactcgttgaaccacttaacctgacctttaatctttgccatttgaaaaattccttagattgttttcttcgcccgcaggcataacatagataaaactgacacattactgcatgaggcaccaatataaggctcggcagag < 2:744248‑M1/139‑139 (MQ=255) | GTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTAT > NC_000913/1050407‑1050683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |