mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_010468 | 4,093,564 | 0 | A | C | 55.2% | 148.5 / inf | 251 | V380G (GTT→GGT) | uxuA | mannonate dehydratase |
| * | NC_010468 | 1,836,970 | 0 | A | G | 20.2% | 1684.0 / 259.7 | 764 | pseudogene (3479/4242 nt) | ECOLC_RS08830 | DUF4329 domain‑containing protein |
| Marginal new junction evidence (lowest skew 10 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_010468 | 3432161 = | 1091 (1.080) | 182 (0.190) +GAAGGCGTTTACGCT |
38/562 | 3.8 | 16.5% | intergenic (+82/+840) | copA/ECOLC_RS16850 | copper‑exporting P‑type ATPase CopA/HigA family addiction module antidote protein |
| ? | NC_010468 | = 3432953 | 848 (0.840) | intergenic (+874/+48) | copA/ECOLC_RS16850 | copper‑exporting P‑type ATPase CopA/HigA family addiction module antidote protein | |||||
| * | ? | NC_010468 | = 4420146 | 562 (0.550) | 22 (0.030) +54 bp |
14/484 | 5.0 | 4.6% | intergenic (‑7/+170) | rrf/ECOLC_RS21605 | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_010468 | 4420294 = | NA (NA) | intergenic (‑155/+22) | rrf/ECOLC_RS21605 | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_010468 | = 3259314 | 747 (0.740) | 12 (0.020) | 11/436 | 5.2 | 2.5% | noncoding (77/77 nt) | ECOLC_RS16035 | tRNA‑Met |
| ? | NC_010468 | 3259707 = | 401 (0.540) | intergenic (+1/‑47) | ECOLC_RS16055/ECOLC_RS16060 | tRNA‑Met/tRNA‑Gln | |||||
| * | ? | NC_010468 | = 973100 | 265 (0.260) | 11 (0.020) | 10/426 | 5.3 | 4.6% | intergenic (‑2/+32) | ECOLC_RS04800/ECOLC_RS04805 | tRNA‑Met/tRNA‑Met |
| ? | NC_010468 | 973321 = | 264 (0.360) | intergenic (‑3/‑206) | ECOLC_RS04810/mltA | tRNA‑Met/murein transglycosylase A | |||||
| * | ? | NC_010468 | 1591575 = | 666 (0.660) | 82 (0.100) +50 bp |
11/492 | 5.4 | 11.1% | intergenic (+136/+581) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin |
| ? | NC_010468 | = 1592089 | 917 (0.900) | intergenic (+650/+67) | mqo/eco | malate dehydrogenase (quinone)/serine protease inhibitor ecotin | |||||
| * | ? | NC_010468 | = 4036702 | 575 (0.570) | 9 (0.010) | 8/414 | 5.5 | 2.1% | intergenic (+1/‑28) | ECOLC_RS19810/ECOLC_RS19815 | tRNA‑Leu/tRNA‑Leu |
| ? | NC_010468 | 4036939 = | 438 (0.620) | intergenic (+2/+37) | ECOLC_RS19820/ECOLC_RS19825 | tRNA‑Leu/DUF1435 domain‑containing protein | |||||
| * | ? | NC_010468 | = 3770976 | 607 (0.600) | 12 (0.010) +54 bp |
7/484 | 5.9 | 2.4% | intergenic (‑7/+170) | rrf/ECOLC_RS18580 | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_010468 | 3771124 = | NA (NA) | intergenic (‑155/+22) | rrf/ECOLC_RS18580 | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_010468 | = 2637891 | 401 (0.400) | 6 (0.010) | 6/418 | 5.9 | 2.1% | intergenic (+1/‑43) | ECOLC_RS12835/ECOLC_RS23310 | tRNA‑Tyr/RtT sRNA |
| ? | NC_010468 | 2638186 = | 267 (0.370) | intergenic (+2/‑45) | ECOLC_RS12840/ECOLC_RS23315 | tRNA‑Tyr/RtT sRNA | |||||
| * | ? | NC_010468 | 1183469 = | 842 (0.830) | 91 (0.100) +41 bp |
7/510 | 6.0 | 11.2% | noncoding (1/76 nt) | ECOLC_RS05835 | tRNA‑Glu |
| ? | NC_010468 | 3774463 = | NA (NA) | intergenic (‑25/+32) | ECOLC_RS18590/ECOLC_RS18595 | tRNA‑Ile/16S ribosomal RNA | |||||
| * | ? | NC_010468 | 1105513 = | 879 (0.870) | 5 (0.010) | 5/434 | 6.1 | 1.0% | intergenic (+3/‑1) | ECOLC_RS05420/ECOLC_RS05425 | tRNA‑Ser/tRNA‑Arg |
| ? | NC_010468 | = 1105787 | 344 (0.460) | intergenic (+197/‑2) | ECOLC_RS05425/ECOLC_RS05430 | tRNA‑Arg/tRNA‑Arg | |||||