mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 92 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 27 (0.250) | 27 (0.260) | 23/440 | 3.6 | 47.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 34 (0.330) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 30 (0.280) | 17 (0.160) | 16/440 | 5.1 | 34.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 35 (0.340) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3242761 = | 263 (2.450) | 9 (0.090) | 8/440 | 7.6 | 3.7% | coding (554/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913 | 3242787 = | 217 (2.100) | coding (528/1488 nt) | uxaA | altronate hydrolase | |||||
| * | ? | NC_000913 | = 3724554 | 135 (1.260) | 8 (0.080) | 7/434 | 7.9 | 5.1% | coding (765/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit |
| ? | NC_000913 | = 3724864 | 167 (1.640) | coding (455/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit | |||||
| * | ? | NC_000913 | 3764850 = | NA (NA) | 7 (0.070) | 6/444 | 8.5 | 4.2% | coding (2668/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3765205 = | 163 (1.520) | coding (3023/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 734148 = | 72 (0.670) | 5 (0.050) +27 bp |
5/404 | 8.5 | 4.6% | pseudogene (16/1521 nt) | rhsO | pseudogene, Rhs family |
| ? | NC_000913 | 3765205 = | 163 (1.520) | coding (3023/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3886453 | 268 (2.500) | 7 (0.070) | 6/452 | 8.6 | 2.4% | coding (1378/1647 nt) | yidC | membrane protein insertase |
| ? | NC_000913 | = 3886602 | 298 (2.810) | coding (1527/1647 nt) | yidC | membrane protein insertase | |||||
| * | ? | NC_000913 | = 3741913 | 267 (2.490) | 6 (0.060) | 5/432 | 8.9 | 2.5% | coding (620/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913 | = 3742213 | 218 (2.150) | coding (320/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||
| * | ? | NC_000913 | 3620030 = | NA (NA) | 5 (0.050) | 5/436 | 8.9 | 100% | coding (839/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620305 = | 0 (0.000) | coding (1114/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3824047 | 255 (2.380) | 5 (0.050) | 5/440 | 9.0 | 2.1% | coding (1648/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | = 3824241 | 227 (2.200) | coding (1842/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||