mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 40.7% | ‑3.3 / 27.1 | 28 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 30.8% | 11.3 / 20.4 | 28 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 14 (0.200) | 13/522 | 4.1 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 12 (0.170) | 11/530 | 4.7 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3625314 | 85 (1.220) | 7 (0.100) +TGGACG |
3/508 | 8.1 | 7.6% | coding (937/1137 nt) | yhhI | putative transposase |
| ? | NC_000913 | 3625315 = | 87 (1.210) | coding (938/1137 nt) | yhhI | putative transposase | |||||
| * | ? | NC_000913 | 781703 = | 73 (1.010) | 3 (0.040) | 3/512 | 8.2 | 4.7% | intergenic (+51/‑382) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| ? | NC_000913 | 2521314 = | 52 (0.760) | noncoding (62/76 nt) | lysV | tRNA‑Lys | |||||
| * | ? | NC_000913 | = 365743 | 95 (1.320) | 3 (0.040) | 3/522 | 8.3 | 3.8% | coding (563/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | = 370412 | 60 (0.860) | coding (136/945 nt) | mhpB | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase | |||||
| * | ? | NC_000913 | = 3713145 | 60 (0.830) | 3 (0.040) | 3/534 | 8.4 | 4.8% | coding (54/564 nt) | tag | 3‑methyl‑adenine DNA glycosylase I, constitutive |
| ? | NC_000913 | 3713149 = | 60 (0.840) | coding (58/564 nt) | tag | 3‑methyl‑adenine DNA glycosylase I, constitutive | |||||
| * | ? | NC_000913 | = 2307845 | 68 (0.940) | 3 (0.040) | 3/536 | 8.4 | 4.2% | coding (771/1644 nt) | yojI | microcin J25 efflux ABC transporter permease/ATPase |
| ? | NC_000913 | 2307849 = | 68 (0.950) | coding (767/1644 nt) | yojI | microcin J25 efflux ABC transporter permease/ATPase | |||||